Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1494 ATGGCGCAAGTTCCTGACAATGATGATAACAGTGAAGAGACGCATCCCAGGTTCCAGACGGCGTTGTACGTAGGGGATCTTGACGAGACCATCGACGAGACCCAGCTCTTTAATATCTTTAATGATGTTGCCAAAGTCCATTCCGTTCGAATTTGCCGCGACTATGCAACTAGGAAGTCCCTTGGTTACGCCTACGTGAATCACACTACCCGTTCTAATGCCGATCAAGCAATAAAAGAGCTAAATTTCATGCCGGTGAATGGCAAAACCATTAGGGTAACGTATGCTAATCGGGACTCCAGTGTTCGTAAGAGTGGTAAAGCTAACCTTTATATAAAGAATTTGGCTCCATCAGTCCATCACAGGGCTCTATTCAATCACTTTACGTCTTATGGGAACATTCTATCTTGCACGGTTGCAACGGATGATTCTGGCCAGTCTAAAGGTATTGGTTTTGTTCAGTTTGAGAGCGAAGCATCTGCAAAAGAAGCGATTGAAAAGTTAAACGGCTCGCTGCTCAACGGAAAAAAGATCTATGTGTGTCCTTTCGTGTCAAAGCAGGACCTAGTGCATGAATCTAGTGACACAAATTTTACAAATGTTTATGTTAAAAACCTGTCAAACACAATAACGGATGCTGAGTTGCAGAATATTTTCGGAGGATATGGTGATATTACTAGTGCTGTAGTGATGAAATATGCAAATGGTAGATCAAAAGGTTTTGGATTTGTGAATTTTGCAAATGCAGACGATGCGGCTAGAGCTCGGGACGGTCTTGATGGACAGACTTTTGATGGTAAGACTTGGTGTGTTAGAAGAGCCCAGACAAAAACTGAAAGGGAGCGTGGACTGACAGAGCTATATGACCAGAATAGGGGGATTTTCTCTCCTAGGCAAGGTAGAAACTTGTATATAAAGAACTTGGACGATAGTATTGATGATAACATACTTAAGGAAGTTTTCTCCGAGTTTGGTGTAATAACCTCAGCCAAGGTTATGAAATATGCAAATGGAGTAAGTAAAGGATCTGGATTTGTTGCATACTCAAATGGGGAGGCAGCAAATCTGGCTATTGAGTCGATGAATGGTCGACTAGTTGCTGGCAAACCTCTGTATGTTGCCCTTGCACAGAAAAGGGAAGAGAGAAGAGCAATGTTAGAGGCATACTTTTCACAAAATACCCAAACACATCCAACTTTAATATCACAAGAAGAACTTGATTACCACCTGCAGAATCTTCCTCACTTAGAGATGGCAACTGGTCCTCCATTTCCATTTCCAATCTTAATGCCTCAGCGCGGACTCCCGCTGCCACTAGGACACCGACCACCAGGTCTTGGGCAACCGCTTGTGTGGCACCAGCAGATGATTCCAAGGGGAAATTTTTATCAAGGTCCTCGTCACCCCAACGTGCAAAATAGAGCAATGGTCCCCTTTAACCTTGGTCAGCCAGCGCCACCTCGGACCTTGGCATCAGTCGTTGCCAGTGTTCCTCCTGCAGAACAGAGGATTGTGCTTGGTGAAACTTTATTCCCGTTAGTAGAAAGGCTGGTGTATAATGCAGCACCAAAGGTTACTGGTATGCTTTTAGAGCTGGACCAGGCTGAGGTTATACATATGATTGAGTCAGCAGATGCTTTGGAGGAAAAAGTTGCGGCGGCCATGGTTGTATTGAGACGAGAGGAAGAAGAGCGATATATCAGGCAAGCCGAGCAACTCGCTTCTCTCTCTTTCAACGAACGCTCTTAG 1749 0.4443 MAQVPDNDDNSEETHPRFQTALYVGDLDETIDETQLFNIFNDVAKVHSVRICRDYATRKSLGYAYVNHTTRSNADQAIKELNFMPVNGKTIRVTYANRDSSVRKSGKANLYIKNLAPSVHHRALFNHFTSYGNILSCTVATDDSGQSKGIGFVQFESEASAKEAIEKLNGSLLNGKKIYVCPFVSKQDLVHESSDTNFTNVYVKNLSNTITDAELQNIFGGYGDITSAVVMKYANGRSKGFGFVNFANADDAARARDGLDGQTFDGKTWCVRRAQTKTERERGLTELYDQNRGIFSPRQGRNLYIKNLDDSIDDNILKEVFSEFGVITSAKVMKYANGVSKGSGFVAYSNGEAANLAIESMNGRLVAGKPLYVALAQKREERRAMLEAYFSQNTQTHPTLISQEELDYHLQNLPHLEMATGPPFPFPILMPQRGLPLPLGHRPPGLGQPLVWHQQMIPRGNFYQGPRHPNVQNRAMVPFNLGQPAPPRTLASVVASVPPAEQRIVLGETLFPLVERLVYNAAPKVTGMLLELDQAEVIHMIESADALEEKVAAAMVVLRREEEERYIRQAEQLASLSFNERS* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1494 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 98 IPR000504 GO:0003723
Vra5g1494 582 Coils Coil 544 564 - -
Vra5g1494 582 Gene3D - 189 287 IPR012677 -
Vra5g1494 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 180 IPR000504 GO:0003723
Vra5g1494 582 SUPERFAMILY RNA-binding domain, RBD 20 186 IPR035979 GO:0003676
Vra5g1494 582 SMART rrm1_1 302 374 IPR000504 GO:0003723
Vra5g1494 582 SMART rrm1_1 200 272 IPR000504 GO:0003723
Vra5g1494 582 SMART rrm1_1 21 94 IPR000504 GO:0003723
Vra5g1494 582 SMART rrm1_1 109 181 IPR000504 GO:0003723
Vra5g1494 582 PANTHER POLYADENYLATE-BINDING PROTEIN 1-RELATED 17 395 - -
Vra5g1494 582 PANTHER POLYADENYLATE-BINDING PROTEIN 1-RELATED 398 565 - -
Vra5g1494 582 SMART poly_2 498 561 IPR002004 GO:0003723
Vra5g1494 582 CDD RRM1_I_PABPs 21 99 - -
Vra5g1494 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 269 IPR000504 GO:0003723
Vra5g1494 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 92 IPR000504 GO:0003723
Vra5g1494 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Vra5g1494 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 371 IPR000504 GO:0003723
Vra5g1494 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 378 IPR000504 GO:0003723
Vra5g1494 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 276 IPR000504 GO:0003723
Vra5g1494 582 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 21 402 IPR006515 GO:0003723
Vra5g1494 582 Gene3D - 3 99 IPR012677 -
Vra5g1494 582 SMART rrm2_1 200 272 IPR003954 GO:0003676
Vra5g1494 582 SMART rrm2_1 302 374 IPR003954 GO:0003676
Vra5g1494 582 SMART rrm2_1 109 181 IPR003954 GO:0003676
Vra5g1494 582 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 486 563 IPR002004 GO:0003723
Vra5g1494 582 SUPERFAMILY RNA-binding domain, RBD 197 382 IPR035979 GO:0003676
Vra5g1494 582 CDD RRM2_I_PABPs 106 182 IPR045305 -
Vra5g1494 582 Gene3D - 296 402 IPR012677 -
Vra5g1494 582 PANTHER RNA BINDING PROTEIN 398 565 - -
Vra5g1494 582 PANTHER RNA BINDING PROTEIN 17 395 - -
Vra5g1494 582 SUPERFAMILY PABC (PABP) domain 450 576 IPR036053 GO:0003723
Vra5g1494 582 Gene3D - 100 188 IPR012677 -
Vra5g1494 582 Pfam Poly-adenylate binding protein, unique domain 494 558 IPR002004 GO:0003723
Vra5g1494 582 Gene3D - 483 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1494 Vra-Chr5 21619849 21622568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1494 20 580 Eukaryotic Initiation Factors Gene Family AT1G49760 44.976 1.59e-171 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1494 K13126 - gmx:100778879 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1494 5 21619849 21622568 Vra5g1494 5 21619849 21622568 ECH