Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1493 ATGACTACCAGCATGAAGGTGCATCACTTCACACGTGCATTCTGGGAGCACGAACCCTTCCTCACCCTTGGCTGCAAGCGATTACGCCCTCTTGCTCCCAAACTGCCCACCACCACCACTTCTCTTCCTTTTGATCTCAAGACCTTCATCAGACCAGAAAGTGCTCCCAGAAAACAAGTTTCCTCTCTCCACAATAACAAGGATCCACCTTCACCCCAACCCCAGGTTGAAACGCATCCAGGAGGGACGCGGTGGAATCCGACGCAAGAACAGATAGGTATATTGGAGATGCTGTACAAAGGAGGGACGAGAACTCCGAATGCTCAGCAGATAGAGCAGATCACTGTTCAGTTAGGAAAGTACGGAAAAATCGAAGGGAAGAATGTGTTTTATTGGTTTCAGAATCACAAAGCACGCGAGAGACAAAAGCAGAAGCGTAACAGCCTTGCCTTTTCTCGTAGTCCTCGAACTCCCACAATTCATTCTGTTGTTACTTTAGAGGCAGCAAAGGGGGAAGTAGTAGATAGAGACGAGGAGGAAGGTAGTCCGTACAAAAAGAAGTGTAGGAGATGGGTATTTGATTGTTTGGAAGAGCAAAGCATGTCGTCGTCATCAGTGTGTGAAGAGGAGGAACATAGAACTCTGAAGCTTTTCCCATTGCACCCGGAAGGAAGATGA 678 0.4779 MTTSMKVHHFTRAFWEHEPFLTLGCKRLRPLAPKLPTTTTSLPFDLKTFIRPESAPRKQVSSLHNNKDPPSPQPQVETHPGGTRWNPTQEQIGILEMLYKGGTRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLAFSRSPRTPTIHSVVTLEAAKGEVVDRDEEEGSPYKKKCRRWVFDCLEEQSMSSSSVCEEEEHRTLKLFPLHPEGR* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1493 225 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 225 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Vra5g1493 225 ProSiteProfiles 'Homeobox' domain profile. 78 143 IPR001356 GO:0003677
Vra5g1493 225 Pfam Homeodomain 83 142 IPR001356 GO:0003677
Vra5g1493 225 MobiDBLite consensus disorder prediction 58 87 - -
Vra5g1493 225 SMART HOX_1 80 147 IPR001356 GO:0003677
Vra5g1493 225 MobiDBLite consensus disorder prediction 55 87 - -
Vra5g1493 225 CDD homeodomain 83 144 IPR001356 GO:0003677
Vra5g1493 225 Gene3D - 83 148 - -
Vra5g1493 225 SUPERFAMILY Homeodomain-like 78 150 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1493 Vra-Chr5 21615248 21616672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1493 5 149 Wox Gene Family AT1G46480 64.815 5.25e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra5g1493 Homeodomain 7.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1493 - - gmx:100781015 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1493 5 21615248 21616672 Vra5g1493 5 21615248 21616672 ECH