Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1492 ATGGAAGAAGGTTTAGGAGACTGCTGTTCCTCCAACTCCACCGCCACCACCAGGAAAACCCAGAAACGGAAGCACCAACAACACCAAGACAAACCATACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATTAGAGAACCCAACAAGAGGTCCAGGATCTGGCTGGGTTCTTACGCCACCCCTGTCGCTGCCGCACGCGCCTACGACACCGCTGTCTTCTACCTCAGAGGCCCTTCCGCCCGCCTCAATTTCCCAGAACTATTGTTCCAAGACGATGACGTTTCAACCCAAGAGGGCAACATGTCCGCTGATTGTATACGCAAGAAAGCGACCCAAGTCGGCGCGAGAGTCGACGCGCTCCAAACCGCGCTTCAATCATCGTCGTCCCACTCCGCTAATTCCAGCCACGTCAGCTCTGACAAACCAGACTTGAACGAGTATCCAAAACCCGAAGATTAG 471 0.5435 MEEGLGDCCSSNSTATTRKTQKRKHQQHQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFYLRGPSARLNFPELLFQDDDVSTQEGNMSADCIRKKATQVGARVDALQTALQSSSSHSANSSHVSSDKPDLNEYPKPED* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1492 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 156 - -
Vra5g1492 156 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Vra5g1492 156 PRINTS Ethylene responsive element binding protein signature 71 91 IPR001471 GO:0003700|GO:0006355
Vra5g1492 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 156 - -
Vra5g1492 156 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Vra5g1492 156 MobiDBLite consensus disorder prediction 126 156 - -
Vra5g1492 156 MobiDBLite consensus disorder prediction 126 145 - -
Vra5g1492 156 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Vra5g1492 156 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Vra5g1492 156 MobiDBLite consensus disorder prediction 1 33 - -
Vra5g1492 156 Pfam AP2 domain 33 81 IPR001471 GO:0003700|GO:0006355
Vra5g1492 156 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Vra5g1492 156 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1492 Vra-Chr5 21606160 21607316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1492 27 131 AP2-EREBP Transcription Factor Family AT5G67190 72.477 9.06e-52 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra5g1492 AP2 5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1492 K09286 - gmx:100801528 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1492 5 21606160 21607316 Vra5g1492 5 21606160 21607316 ECH