Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1489 ATGTCGAACGCAAACCATCCATTCCCATTACTGTTACTGCTTCTGCTCCTGCCACTGCACGCTTCTTCCTACGCACATTCCTCCCAACTCCATCGTCATATTCCACCGTTAGTTTTCACCGACGCCCACGCTCTCCTCGCCTTCAAACTTAAAGCCGACGTAAACGACCACCTTGACTTCTCCCCCCTCACGCGCGGCCTCCGCTTCTGCACGTGGCAGGGCGTCCTATGCAACGGCCCCAAAGTAGAGCGTCTCATTCTCCAGGGCTTAGATCTCGGCGGCGTTTGGGCTCCAAACACACTCACGCGTCTCGACCAGCTCCGAGTTCTCAGTTTACAGAACAACTCACTCACTGGAACCATCCCGGACCTCAGCGCTCTCTCCAATCTCAAAAGCCTCTTTCTGGACAACAACCAATTCACCGGTTCTCTCCCTCCTTCACTCTTCTCTCTCCACCGTTTACGAAACTTGGATTTCTCTCACAACAATCTCTCTGGACCTATCTCTGCTGCCTTCACTAACCTAGACCGTCTTCACACACTCCGTCTTAGTTATAACGCTTTTAGCGGTTCAGTTCCTCCGTTTAACCAGTCCTCTCTCAGAATACTTGAAATCTCCCGCAACAACCTCTCCGGCGCGATTCCCGTGACGCCGACGCTGTTTCGTTTTCCGCCGTCTTCCTTCGCGTTCAACCCTAACCTCTGCGGTGAAATCATCCGCGTGCAATGCCGTCCTGCGCAGCCTTTCTTCGGGCCCGCTGGGCCACCTAAGACGCCGCTCGGTCAGAGCGCGCAGGTGCACGGCGTCAGTGGCTTAATCAGACAGCCTTACGCGAAGAAGCAGCGCGATCGGCGGGCTGTGATAATCGGATTCTCCGCCGGCGTGTTCGTTCTGGTTTGCTCGCTGGTGTGCTTCGCGGCGGCGGTGAGAAAGCAGAGGAGCCGGTGCAATAAGGACCGGCGGTGCGGGATGATGGCGGCGGATGTGGCAGCCACCGCGGAGGCCGCAGCAGTGATGCGGATGGAGATGGAGAGAGAGTTGGAAGAGAAGGTGAAGAGAGCGGAGGTGGCGAAGAGTGGGAGTTTGGTATTCTGTGCGGGTGAGGCGCAAGTGTATACGCTGGACCAGTTGATGAAGGGTTCCGCGGAGCTTTTAGGGAGAGGGTGTTTGGGAACAACTTACAAGGCGGCTCTTGATAACCGTCTGATGGTGACGGTGAAGCGCCTTGATGCGGGGAAAATGGCTGCCCATGCAACGAAGGAAGTGTTCGAGCGACACATGGAAGCCGTGGGTGGGCTTCGACACTCCAATTTGGTTCCTCTTAGGGCCTATTTCCAGGCCAAGCAAGAGAGGCTCATTATCTATGACTTTCAGCCCAATGGCAGTCTCTTCTCCCTCATACACGGATCGAGATCAAGCAGGGCAAGACCATTACACTGGACATCATGCTTAAAAATAGCAGAGGACGTAGCACAAGGTCTGGCCTTCATCCACCAGGCATGGAGACTGGTCCATGGCAATCTTAAGTCCACGAATGTTCTTCTTGGACCTGATTTCGAGGCTTGCATCACAGATTACTGCCTCTCCGTTTTGACACACCCATCCACATTTGATGAAGATGGCGATTCAGCAGCGTACAGAGCTCCAGAGACTCGCAACCCCAATCATCAGCCAACCCACAAATCCGATGTTTATGCCTATGGGATTTTGGTGCTTGAGCTTCTGACTGGGAAATATCCCTCAGAGCTTCCATTTATGGTTCCTGGTGACATGTCAAGTTGGGTGAGGTCCATCAGGGATGACAATGGGGGCGAAGATAGCCGAATGGACATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGACCTCACCGGAGCAGAGGCCAACTATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAAATTGTACTGTTGGAGGATACCAGTGAATTGGAACTGCGCAGTGGTGATTCCATGCCTTAG 1986 0.5378 MSNANHPFPLLLLLLLLPLHASSYAHSSQLHRHIPPLVFTDAHALLAFKLKADVNDHLDFSPLTRGLRFCTWQGVLCNGPKVERLILQGLDLGGVWAPNTLTRLDQLRVLSLQNNSLTGTIPDLSALSNLKSLFLDNNQFTGSLPPSLFSLHRLRNLDFSHNNLSGPISAAFTNLDRLHTLRLSYNAFSGSVPPFNQSSLRILEISRNNLSGAIPVTPTLFRFPPSSFAFNPNLCGEIIRVQCRPAQPFFGPAGPPKTPLGQSAQVHGVSGLIRQPYAKKQRDRRAVIIGFSAGVFVLVCSLVCFAAAVRKQRSRCNKDRRCGMMAADVAATAEAAAVMRMEMERELEEKVKRAEVAKSGSLVFCAGEAQVYTLDQLMKGSAELLGRGCLGTTYKAALDNRLMVTVKRLDAGKMAAHATKEVFERHMEAVGGLRHSNLVPLRAYFQAKQERLIIYDFQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLAFIHQAWRLVHGNLKSTNVLLGPDFEACITDYCLSVLTHPSTFDEDGDSAAYRAPETRNPNHQPTHKSDVYAYGILVLELLTGKYPSELPFMVPGDMSSWVRSIRDDNGGEDSRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDTSELELRSGDSMP* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1489 661 Pfam Protein tyrosine and serine/threonine kinase 383 637 IPR001245 GO:0004672|GO:0006468
Vra5g1489 661 SUPERFAMILY L domain-like 40 217 - -
Vra5g1489 661 Gene3D Ribonuclease Inhibitor 39 242 IPR032675 -
Vra5g1489 661 SUPERFAMILY Protein kinase-like (PK-like) 383 638 IPR011009 -
Vra5g1489 661 Gene3D Transferase(Phosphotransferase) domain 1 459 652 - -
Vra5g1489 661 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 649 - -
Vra5g1489 661 Gene3D Phosphorylase Kinase; domain 1 342 457 - -
Vra5g1489 661 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 9 649 - -
Vra5g1489 661 ProSiteProfiles Leucine-rich repeat profile. 106 128 IPR001611 GO:0005515
Vra5g1489 661 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515
Vra5g1489 661 ProSiteProfiles Protein kinase domain profile. 379 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1489 Vra-Chr5 21548842 21552334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1489 41 659 Receptor kinase-like Gene Family AT5G43020 55.573 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra5g1489 PK_Tyr_Ser-Thr 3.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1489 - - var:108341030 1247.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1489 5 21548842 21552334 Vra5g1489 5 21548842 21552334 ECH