Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1480 ATGGTCGGGGAAGATGATAGATACCAAATTGGAGTTCTAAACATGAATGCAAAGAACATAATCTTGACTATGGAAGTTAATGTTTCAGCAAAGGTATATGATACCACCAAAGCCAAGAAGATGTGCTCCACTGAAAATGGACCTTGTAGAATCAGTTTTTTCTTCCCAGATACTCATTATGTTATTCTTACGGCAGCCAACAATGGAAATGGGGTAACGTATGTTGAAATTTCTTTAGTGGCCCGTGTGGTTGTCTACGTATTAATTCTAGGAGTTACTGCGATTGTTGTTTATCTGATTCTGAAAATCCTTGGAGTTTATGATGATGCTGAGCAGCATAGTCAAGTTACAATCGATGTTACATACAGAACAAGTAATGTGGTTGCAGCACAGGCCGAAACTGAGCCATTGATGCGAGTGGAGGAAAATCGAATGTCATATGGAACAAATGCAAAAGATGATAAACAAAATTCAGGAGCATATAGTAGCTCTTCATCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACACTGTGCCACTTGCTATGACTGCGCACAGAGGATTGTCGATGAGGAGAGCAAAGTATGTCCTATATGCCGAAGGCTTATTCACAAAGTACGAAGATTGTTTCACATTTAG 684 0.3889 MVGEDDRYQIGVLNMNAKNIILTMEVNVSAKVYDTTKAKKMCSTENGPCRISFFFPDTHYVILTAANNGNGVTYVEISLVARVVVYVLILGVTAIVVYLILKILGVYDDAEQHSQVTIDVTYRTSNVVAAQAETEPLMRVEENRMSYGTNAKDDKQNSGAYSSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAQRIVDEESKVCPICRRLIHKVRRLFHI* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1480 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 226 IPR013083 -
Vra5g1480 227 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 226 - -
Vra5g1480 227 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Vra5g1480 227 SMART ring_2 175 214 IPR001841 -
Vra5g1480 227 Pfam Zinc finger, C3HC4 type (RING finger) 172 221 - -
Vra5g1480 227 PANTHER OS05G0521000 PROTEIN 2 226 IPR044586 GO:0004842
Vra5g1480 227 Pfam Domain of unknown function (DUF4793) 2 99 IPR032010 -
Vra5g1480 227 SUPERFAMILY RING/U-box 166 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1480 Vra-Chr5 21467146 21468354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1480 164 225 C3H Transcription Factor Family AT1G62370 33.871 5.04e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1480 - - vra:106761620 449.514