Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1478 ATGTACTTTATGCTCCCTACAGCAATGCATATCAAACCCTTTCTCCTTCTCCTCTTCATCTCAACTTCATCTGCTGCTGCACCCACAGATACACTTCAAGAAGGTTCTTCACTTTCAGTAGAGAAACAAAGCGACATCCTCTTTTCATCCAATGGTGATTTTTCAGCTGGCTTCTTCCAAGTTGGTGAAAACGCCTTCTGCTTCTCCGTCTGCTTCACGCGCTCCAAACAACCCACCGTGGTGTGGATGGCCAACCGTGACGAACCTGTCAACGGCAAAGGATCCTTCCTCTCACTCTGGAAAAACGGCAACCTCGTTTTGACGGATGCCGGAGGAACCGTTATCTGGGAAACCGCCACTCTTTCCTCCTCCCAACTTTATCTGAAGCTAAGAAACAACGGAAACCTCCTTCTCCTCAATTCCAAAGGCACCACCATTTGGCAAAGCTTCACTTCCCCAACCGACACCCTTCTTCCAACGCAACCACTCACGGAGCGAGGCGGTCTCGTTTCTTCGAGAAGTGCAACGAACCATTCCTCGGGGTTCTACAAGCTTTACTTCGACAACGACAACGTTCTTCGCTTACTCTACAAAGGTCGCACGTTTTCCAGCGTGTACTGGCCACCATCGTGGAAGCTTGCAATTGACATAGGCAGATCCACCTACAATGTAACCAAAACTGCTTCTTTAGATTCTTTTGGACAATTCACTTCCTCTGACGGGTTTCAATTTATCTCCACGGATTATCCCAAAAAAGTGTACCGGATACTCAAGTTGGATTCTGATGGTAATTTGCGTTTGTATAGCTTCAACGAGGAGCGTAAGACGTGGGAGGTGACGTGGCAAGTTATTTCAGAACCGTGCACCATTCATGGAATTTGTGGAGCGAACAGCATGTGCAATCATGATCCCGTTATTGGAAGGACTTGCTATTGCTTGAAAGGGTTTAAGGTTAAGGATCCCAATGACTGGACTCAGGGCTGTGAGCCCGAGTTTTCTCCTTCATATTTTTCTTGCAACAGTCGCCAGTCATTTGGTTTTCTCCGTCTTCAAACCGCGGAACTGTATGGCTACGACTGGAACGTGACACGCGTTTCGAGCTTTAAGGAATGCCTGAATATATGTCTGTCACTTTGCGATAAATGTGTAGCTGTTCAATTAAAGTTTAACGAGTTTGCTACCTATAATTGTTACCCGAAAACGATGGCATTCAATGGACGGGATATTCCTGGTTTCGATGGAGAGATCTATCTAAAGTTGCCGAATTCGATTCTGCGCTCGTCCACGAAGATTCTAAAGCATTCCCGGATGAATTGCTCCGTTGGTTTGTCTCAAAAGTTGAACAGGGTTTATCAGCCGCCAAAAAAAAACTCCACATTGAGTTTCTTGGTTTGGTTCGCTTGCGGGTTCGGAGTGTTTGAGTTTTCCACCATTTTCTTGGTGTGGTTCTTCTTGTTCAGAACAAGCAAGCAGCCTCACAGGCTGGATCAACAACATCACCTTCTGTCTGCCACAGGTTTTCAGAGGTTCACCTACGCAGAGCTAAAATCCGCGACAAAAGGGTTCAAAGAAGAGGTTGGGCGAGGAGCAGGCGGGGTTGTTTACAAGGGGACATTATATGATAACCGTGTTGCGGCTATTAAACGCTTAAACGAAGCTACTCAAGGGGAAGCTGAATTTTTGGCTGAAATAAGCACAATTGGCATGCTGAACCACATGAATCTGATTGACATGTGGGGGTATTGTGTTGAAGGGAAGCACAGGCTTTTGGTGTATGAGTACATGGAACATGGATCCTTAGCAGACAATCTTTTTGGCAACGGTCTTGATTGGAAGAAAAGGTTCAACGTTGCCGTGGGTACAGCCAAAGGTTTAGCTTACTTACACGAAGAGTGTTTGGAGTGGATTTTGCATTGCGACGTGAAGCCTCAAAACATTCTGCTTGACTCAGAGTTCCAACCCAAGGTAGCAGATTTTGGGTTGTCGAAACTTTTAAACAGAGACGAGCGTGGAAATTCTAGTTTTTCACGAATAAGAGGGACTCGAGGATACATGGCTCCGGAGTGGGTTTACAATCTGCATATCACTTCTAAGGTGGATGTTTATAGCTATGGGATTGTGGTGTTGGAAATGGTGAGTGGAAGAAGCCCTGTGGCAATTCACAGTCTCGAGAACAAAGGGGACATGGATCACCATCGCCTGGTTACGTGGATAAGGGAGAAGATAAAGCATGCACCCACTTGTGCGTTTTGGATGGAGGAGATCATTGATCCCAAGTTAGAAGGAAACTTCGACGTTTCAGAAGTAGAGGTTTTGGTCAAAGTGGCTTTACAGTGCGTCCAAGATGACATGAACGAAAGACCATCCATGAGTCAAGTTGCAGAAATGCTTCTGGCCAACCAAAATAAACTCCTCTCTCCTTAA 2424 0.4587 MYFMLPTAMHIKPFLLLLFISTSSAAAPTDTLQEGSSLSVEKQSDILFSSNGDFSAGFFQVGENAFCFSVCFTRSKQPTVVWMANRDEPVNGKGSFLSLWKNGNLVLTDAGGTVIWETATLSSSQLYLKLRNNGNLLLLNSKGTTIWQSFTSPTDTLLPTQPLTERGGLVSSRSATNHSSGFYKLYFDNDNVLRLLYKGRTFSSVYWPPSWKLAIDIGRSTYNVTKTASLDSFGQFTSSDGFQFISTDYPKKVYRILKLDSDGNLRLYSFNEERKTWEVTWQVISEPCTIHGICGANSMCNHDPVIGRTCYCLKGFKVKDPNDWTQGCEPEFSPSYFSCNSRQSFGFLRLQTAELYGYDWNVTRVSSFKECLNICLSLCDKCVAVQLKFNEFATYNCYPKTMAFNGRDIPGFDGEIYLKLPNSILRSSTKILKHSRMNCSVGLSQKLNRVYQPPKKNSTLSFLVWFACGFGVFEFSTIFLVWFFLFRTSKQPHRLDQQHHLLSATGFQRFTYAELKSATKGFKEEVGRGAGGVVYKGTLYDNRVAAIKRLNEATQGEAEFLAEISTIGMLNHMNLIDMWGYCVEGKHRLLVYEYMEHGSLADNLFGNGLDWKKRFNVAVGTAKGLAYLHEECLEWILHCDVKPQNILLDSEFQPKVADFGLSKLLNRDERGNSSFSRIRGTRGYMAPEWVYNLHITSKVDVYSYGIVVLEMVSGRSPVAIHSLENKGDMDHHRLVTWIREKIKHAPTCAFWMEEIIDPKLEGNFDVSEVEVLVKVALQCVQDDMNERPSMSQVAEMLLANQNKLLSP* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1478 807 Gene3D Transferase(Phosphotransferase) domain 1 595 805 - -
Vra5g1478 807 CDD PAN_AP_plant 338 421 - -
Vra5g1478 807 PANTHER OS07G0415500 PROTEIN 10 802 - -
Vra5g1478 807 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 208 IPR036426 -
Vra5g1478 807 Gene3D Phosphorylase Kinase; domain 1 486 594 - -
Vra5g1478 807 Pfam Protein kinase domain 523 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1478 807 Gene3D - 23 153 IPR036426 -
Vra5g1478 807 CDD STKc_IRAK 526 797 - -
Vra5g1478 807 SUPERFAMILY Protein kinase-like (PK-like) 496 797 IPR011009 -
Vra5g1478 807 ProSiteProfiles Protein kinase domain profile. 520 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1478 807 ProSiteProfiles Bulb-type lectin domain profile. 23 151 IPR001480 -
Vra5g1478 807 SMART serkin_6 520 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1478 807 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 10 802 - -
Vra5g1478 807 Pfam D-mannose binding lectin 79 163 IPR001480 -
Vra5g1478 807 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524
Vra5g1478 807 SMART blect_4 38 153 IPR001480 -
Vra5g1478 807 PIRSF SRK 1 807 IPR024171 GO:0004674
Vra5g1478 807 ProSiteProfiles PAN/Apple domain profile. 339 421 IPR003609 -
Vra5g1478 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Vra5g1478 807 Pfam S-locus glycoprotein domain 250 319 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1478 Vra-Chr5 21436525 21439156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1478 453 797 Receptor kinase-like Gene Family AT1G56120 40.282 5.60e-67 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra5g1478 Pkinase 1.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1478 - - gmx:100816469 1279.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1478 5 21436525 21439156 Vra5g1478 5 21436525 21439156 ECH