Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1477 ATGTCTCTGCAACTTTCATTTTCAGCAGTAGAAATCCTGCATCAAGGTTCATCCCTCTCAGTGGAGGGCCCCAACGATTTCATGCTTTCACCAAATGCCATCTTCTGTGCCGGTTTCTGTGCAGTTGGTCAAAACGCATATTCATTCGCTGTTTGGTACGCCCAAACCAACGGCGAAACCCAGGATGCAACCGTCGTATGGATGGCGAATCGTGACTACCCCGTTAACGGCAAGGGCTCGAAGCTTTCCCTTCTTCCCAACGGCAACCTCGCCTTAAGGGACGCCGACGAATCCCACGTTTGGTCAACAAACACCATTTCACTGTCGTCTGTGCAACTGTTTCTCGACAATACTGGCAACCTCGTTCTGAGTGAAACGAAGGGTGGCGGTGTCGTCTTGTGGCAGAGCTTTGATTTCCCTACGGACACGCTCTTGCCTCAACAAGTGTTCACGAGATACGTGAAGCTGGTCTCTTCCAGAAGCGAGAGTAACAAGTCCTCCGGTTTCTACTCCTTGTTCTTCGACAACGACAACGTTCTTCGTCTTCTTTACGATGGTCCTGAAGTTTCTGGCCTTTACTGGCCAGATCCATGGTTGGCCACTTGGAACGCTGGACGTTCCACTTACAACAACAGTAGAGTTGCGGTGATGGACACACTCGGCAATTTCAGTTCTTCAGACCATTTCTCTTTTTTGACATCCGATTATGGCACTCTGATCCAAAGAAGATTAGTGCTTGATCATGATGGAAACATTCGTGTTCATAGTCGCAGAAATGGTGGAGAGAAATGGTCTATTACGTGGCAAGCGAAAGCTAGACCGTGTAGAATTCATGGTCTTTGTGGCCCTAACAGTTTGTGCTCTTACCACCAAAATTCTAGTGTGAATTGCTCTTGCCTTCCCGGGTATAAGAGGAAGAATGATCACGATTGGTCTTTTGGATGTGAACCGAAATTCTCTACTCTTTGCAATAAAACACAGTCTCGGTTTTTGCATATAAGCCACGTGGAGCTATATGGCTATGACTATGGGATTTTGAAAAATTACACTCTCCATCAGTGTCAGCAGTTATGCCTTCAATTATGCCACTGTAAAGGCATTCAGTATACATATGTCTTTGGCAGTGGCACTTATACTTGTTACCCGAAGTTGCAGCTACGGAATGCGTATAGGACACCGTATTTCAACGCTGATTTGTACCTGAAATTTCCAGCAAATAGTTCATATTCTTTTGAAGGATCCACACACGAGCAGAGTCTTGACTGTTCTTCGAGTTTGAGCACGATGCAGCTTGAGAGAGCGTACATGAGTCATGAGAACGGATATGTCAAGTTCTTGCTTTGGTTTGTAGGAGGATTGGGGGCATTCGAAGTTTTATGCATATTTGTGATTTGTTTTTTAATGGTGAGAGCAAGGGAGAGAAAATATTCTGGTGTGGATAGACGAGTCTATCATTTGGCCATGACTGGTTTCAGAAAGTTCAGTTATTCTGAACTGAAACAAGCGACGAAAGGGTTCCGTGAGGAGATAGGAAGGGGTGCAGGAGGGGTTGTATTCAAAGGTGTGTTGTTGGATCAAAGAGTTGCAGCTGTGAAGAGACTGAAGGATGCGAATGAAGGAGAAGAAGATTTCCTGGCAGAAGTAAGCAGCATTGGAAGGCTTAACCATATGAACTTGATTGAGATGTGGGGGTATTGTGCTGAGGGAAAACATAGACTCTTGGTGTATGAGTACATGGAGCAAGGGTCGCTAGCACAAAATATGGAGTCAGATGAACTAGACTGGACCAAGAGGTTTAACATAGCACTAGGTACAGCAAAAGGGTTGGCTTATGTTCACGAGGAGTGCTTGGAGTGGATTCTACACTGTGATGTAAAGCCCCAAAACATTCTTCTAGATTCTAACTATCATCCAAAGGTAGCGGATTTTGGGCTGTCAAAGCTGCGAAACAGAAATGATACTAGTACATACTCTAGTTTTTCACGGATACGAGGAACAAGAGGTTACATGGCTCCTGAGTGGGTTTTGAACCAACGAATCACGTCCAAAGTTGACGTTTATAGCTATGGAATTGTTGTTTTGGAAATGGTGACCGGAAAGAGTGTTGATGGCACTGATAATGGAGTGGTGGCGTGGCTTAAAGATAAACAGAAAAATGGATGCGGTTGGGTTGGTGAAATATTGAAACCCAATGTAAAAGGAGTTTACGAGGAGGATCAGATTGAAGGTTTGCTGAGAGTGGCTCTGCAATGTGTGGAAGAAGAAAAGGAGAAAAGACCCACAATGAGTCAAGTAGTAGAAATGCTTATCAAATGTAAACGCGAAGATGATAATCTGCATCATCTCTCATAA 2352 0.4452 MSLQLSFSAVEILHQGSSLSVEGPNDFMLSPNAIFCAGFCAVGQNAYSFAVWYAQTNGETQDATVVWMANRDYPVNGKGSKLSLLPNGNLALRDADESHVWSTNTISLSSVQLFLDNTGNLVLSETKGGGVVLWQSFDFPTDTLLPQQVFTRYVKLVSSRSESNKSSGFYSLFFDNDNVLRLLYDGPEVSGLYWPDPWLATWNAGRSTYNNSRVAVMDTLGNFSSSDHFSFLTSDYGTLIQRRLVLDHDGNIRVHSRRNGGEKWSITWQAKARPCRIHGLCGPNSLCSYHQNSSVNCSCLPGYKRKNDHDWSFGCEPKFSTLCNKTQSRFLHISHVELYGYDYGILKNYTLHQCQQLCLQLCHCKGIQYTYVFGSGTYTCYPKLQLRNAYRTPYFNADLYLKFPANSSYSFEGSTHEQSLDCSSSLSTMQLERAYMSHENGYVKFLLWFVGGLGAFEVLCIFVICFLMVRARERKYSGVDRRVYHLAMTGFRKFSYSELKQATKGFREEIGRGAGGVVFKGVLLDQRVAAVKRLKDANEGEEDFLAEVSSIGRLNHMNLIEMWGYCAEGKHRLLVYEYMEQGSLAQNMESDELDWTKRFNIALGTAKGLAYVHEECLEWILHCDVKPQNILLDSNYHPKVADFGLSKLRNRNDTSTYSSFSRIRGTRGYMAPEWVLNQRITSKVDVYSYGIVVLEMVTGKSVDGTDNGVVAWLKDKQKNGCGWVGEILKPNVKGVYEEDQIEGLLRVALQCVEEEKEKRPTMSQVVEMLIKCKREDDNLHHLS* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1477 783 SMART serkin_6 504 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1477 783 PIRSF SRK 1 781 IPR024171 GO:0004674
Vra5g1477 783 Gene3D Phosphorylase Kinase; domain 1 469 578 - -
Vra5g1477 783 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 195 IPR036426 -
Vra5g1477 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Vra5g1477 783 Pfam S-locus glycoprotein domain 223 306 IPR000858 GO:0048544
Vra5g1477 783 SMART blect_4 19 140 IPR001480 -
Vra5g1477 783 ProSitePatterns Protein kinases ATP-binding region signature. 510 532 IPR017441 GO:0005524
Vra5g1477 783 SUPERFAMILY Protein kinase-like (PK-like) 483 770 IPR011009 -
Vra5g1477 783 ProSiteProfiles PAN/Apple domain profile. 323 404 IPR003609 -
Vra5g1477 783 Pfam Protein kinase domain 508 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1477 783 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 3 773 - -
Vra5g1477 783 ProSiteProfiles Bulb-type lectin domain profile. 4 136 IPR001480 -
Vra5g1477 783 SMART ntp_6 325 403 IPR003609 -
Vra5g1477 783 ProSiteProfiles Protein kinase domain profile. 504 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1477 783 CDD STKc_IRAK 510 771 - -
Vra5g1477 783 Pfam D-mannose binding lectin 64 152 IPR001480 -
Vra5g1477 783 Gene3D - 8 139 IPR036426 -
Vra5g1477 783 Gene3D Transferase(Phosphotransferase) domain 1 579 781 - -
Vra5g1477 783 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 3 773 - -
Vra5g1477 783 CDD B_lectin 23 140 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1477 Vra-Chr5 21426552 21428903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1477 459 769 Receptor kinase-like Gene Family AT5G20050 38.506 1.19e-60 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra5g1477 Pkinase 2.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1477 - - gmx:100792388 1269.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1477 5 21426552 21428903 Vra5g1477 5 21426552 21428903 ECH