Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1472 ATGGAGACTCGTGCCGCCTCAAAGAGAAAGGCAAATGCAATGGTGTTGGTCCAAAAACAACATCCTAAAAGGCATAGGGTTGCTTTGGCTGAACTCCCCAATTTACCAAATCATATTGTTTCAGGAACTCAAAATCCTTTGAAAGAGAAATCGCGAAGTGTGAAGAATCTCAATGGGAAGAAGCCATCTCCCACAACCGATCAATCTTCTTCTCTACACATTGATGAATCCCTTGTTTCTGATGTCTATGAGTATCTTCACGAGATGGAGATGCAGAAAAAGAGGAGACCAATGGTTGACTACATTGAGAAAGTTCAGAAGCTAGTTACACCAACCATGAGAGCAATCTTGGTGGATTGGTTAGTAGAAGTGGGTGAGGAGTACAAGCTTCTCCCTGATACTCTTCATCTCTCTGTTTCATACATTGATAGGTTTTTGTCGGTTAATCCCGTGACTAAATCGAGACTTCAGTTGCTGGGTGTTTCCTCCATGCTCATTTCATCCAAATATGAGGAAATGGATCCACCTTGTGTGAATGATTTTTGCAGTATCACTGATTATACATATGACAAGGCAGAGGTTGTTAAGATGGAAGCTGACATACTGAAGTCACTACAATTTGAAATGGGAAGTCCCACTGTGAACACTTTTCTCAGGAGGTTTGCTGATGTTGTTTCTGACAATGAAATAACTCCAAATTCACAGATTGAATTTTTGGGCCGCTATCTTGCTGAATTAAGCTTGTTGGACTATGATTGTTTGAGATTTTTGCCTTCTGTTGTGGCAGCGTCAGCTGTATTTCTTTCCAAGTTTATTATCTCGCCTGAAGTGCATCCATGGACTCCTTCTTTGAATGCATGTTCGGGTTACAAACCAGCTGAATTGAAAGAATGTGTCCTAACCTTGCATGACCTGTACTTGTTACGAAAGGCAGCATCCTTCAAAGCTGTCCGGAATAAGTACAAGCAACAAAAGTTTAAATGTGTTGCAAACCTGCCTTCCCCTCCTTATGTACCAAATTGTTACTTTGAAGACCAGTGA 1041 0.4111 METRAASKRKANAMVLVQKQHPKRHRVALAELPNLPNHIVSGTQNPLKEKSRSVKNLNGKKPSPTTDQSSSLHIDESLVSDVYEYLHEMEMQKKRRPMVDYIEKVQKLVTPTMRAILVDWLVEVGEEYKLLPDTLHLSVSYIDRFLSVNPVTKSRLQLLGVSSMLISSKYEEMDPPCVNDFCSITDYTYDKAEVVKMEADILKSLQFEMGSPTVNTFLRRFADVVSDNEITPNSQIEFLGRYLAELSLLDYDCLRFLPSVVAASAVFLSKFIISPEVHPWTPSLNACSGYKPAELKECVLTLHDLYLLRKAASFKAVRNKYKQQKFKCVANLPSPPYVPNCYFEDQ* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1472 346 ProSitePatterns Cyclins signature. 114 145 IPR006671 -
Vra5g1472 346 Gene3D - 95 210 - -
Vra5g1472 346 SMART cyclin_7 119 203 IPR013763 -
Vra5g1472 346 SMART cyclin_7 216 304 IPR013763 -
Vra5g1472 346 PANTHER CYCLINS 25 345 IPR039361 -
Vra5g1472 346 Pfam Cyclin, C-terminal domain 212 334 IPR004367 -
Vra5g1472 346 CDD CYCLIN 113 202 IPR013763 -
Vra5g1472 346 SUPERFAMILY Cyclin-like 79 209 IPR036915 -
Vra5g1472 346 CDD CYCLIN 212 303 IPR013763 -
Vra5g1472 346 PANTHER CYCLIN-A3-1-RELATED 25 345 - -
Vra5g1472 346 Gene3D - 81 331 - -
Vra5g1472 346 MobiDBLite consensus disorder prediction 38 72 - -
Vra5g1472 346 Pfam Cyclin, N-terminal domain 81 209 IPR006671 -
Vra5g1472 346 SMART Cyclin_C_2 212 335 IPR004367 -
Vra5g1472 346 SUPERFAMILY Cyclin-like 212 337 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1472 Vra-Chr5 21385902 21388782 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1472 3 345 Core Cell Cycle Gene Families AT5G43080 54.885 9.67e-127 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1472 K06627 - gmx:547779 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1826 6 34722520 34726133 Vra5g1472 5 21385902 21388782 PCT