Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1471 ATGGAGACTCGTGCTGGGGCAAAGAGAAAGAGAAATGAAGCTGTTGTGGTGGTGGAAAAACAACACCCCAAGATGCATCGGGTTGTATTGGGTGAACTTCCCAATCTACCAAACCTTATTGTCCCCGAAAATCAAAATCTGCCCAAACAGAAAGTTTCATGTTGGAAAAATCCCAACACCAAGAAACTATCTTCTTCTCAGATAGACCAACATTATGTATCTGATATCGATGAATATCTTCGTGCAATGGAGAAAAAGAAAAGACCAATAGTTAACTACATGGACAAAGTTCAGTTGGTACTTACCGCAAACATGAGACAAATATTGGTGGATTGGTTAGTAGATGTTGCTGTGGAGTACAAGCTTCTCTCTGAAACTCTTCATCTTTGTGTGTCATTAATAGATAGGTTTTTATCAGTTAGTCCTGTGACAAAATCCAAGCTTCAGTTAGTAGGTGTATCTTCAATGCTTCTTGCCTCGAAGTACGAGGAAACTAAACCACCCAGCGTGGCCAAATTTTGCCGCATCACTGATAACACTTTTGAAAAGAAAGAGGTTGTAAAGATGGAAGCTGAAATACTTGAGTCTCTAAACTTTGAAATTGGCAATCCTACTGCAATCACTTTTCTAAAGAGATTTTTGAGTGTTGCTTCTACTAATGAAAAAACACCAAATTTGAAGATTGAGTTCCTGAGCTTCTACCTTGCTGAGCTAAGTTTGTTGGATTATAGTTGTATAAGATTCTTGCCTTCCATTATAGCTGCATCTGCTTTATTTCTTGCCAGGTTTATTGTCTCTCCCAAAATGCATCCTTGGAGTTTTTCCCTGCCTGAATGGTCAGGTTACAAACCATTTGAGTTGAAAGCTTGTGTTTTCACTTTGCATGACTTGTATTTTTCAAGAAAGGCAGCATCCTTCCGATCTGTTAGGGATAAATATAAACAGTGCAAGTTCAAGTGTGTGGCAAACCTCCCATCTCCTCCACATGTACCAAGTCATTACTTTGAAGATTGGTGA 1017 0.3904 METRAGAKRKRNEAVVVVEKQHPKMHRVVLGELPNLPNLIVPENQNLPKQKVSCWKNPNTKKLSSSQIDQHYVSDIDEYLRAMEKKKRPIVNYMDKVQLVLTANMRQILVDWLVDVAVEYKLLSETLHLCVSLIDRFLSVSPVTKSKLQLVGVSSMLLASKYEETKPPSVAKFCRITDNTFEKKEVVKMEAEILESLNFEIGNPTAITFLKRFLSVASTNEKTPNLKIEFLSFYLAELSLLDYSCIRFLPSIIAASALFLARFIVSPKMHPWSFSLPEWSGYKPFELKACVFTLHDLYFSRKAASFRSVRDKYKQCKFKCVANLPSPPHVPSHYFEDW* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1471 338 Pfam Cyclin, N-terminal domain 76 201 IPR006671 -
Vra5g1471 338 Gene3D - 75 323 - -
Vra5g1471 338 ProSitePatterns Cyclins signature. 106 137 IPR006671 -
Vra5g1471 338 PANTHER CYCLINS 64 337 IPR039361 -
Vra5g1471 338 SMART Cyclin_C_2 204 327 IPR004367 -
Vra5g1471 338 CDD CYCLIN 105 194 IPR013763 -
Vra5g1471 338 Pfam Cyclin, C-terminal domain 204 326 IPR004367 -
Vra5g1471 338 PANTHER CYCLIN-A3-1-RELATED 64 337 - -
Vra5g1471 338 SUPERFAMILY Cyclin-like 68 201 IPR036915 -
Vra5g1471 338 CDD CYCLIN 204 295 IPR013763 -
Vra5g1471 338 SMART cyclin_7 208 296 IPR013763 -
Vra5g1471 338 SMART cyclin_7 111 195 IPR013763 -
Vra5g1471 338 SUPERFAMILY Cyclin-like 204 329 IPR036915 -
Vra5g1471 338 Gene3D - 89 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1471 Vra-Chr5 21381387 21383591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1471 3 337 Core Cell Cycle Gene Families AT5G43080 53.198 2.83e-121 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1471 K06627 - gmx:100786875 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1471 5 21381387 21383591 Vra5g1471 5 21381387 21383591 ECH