Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1470 ATGGAGACGCGTGCAGCTGCAAAGAGAAAGGCCACAGCTGCTGCTGCTCCCATGGTGGTGGTCCAAAAACAACATCCTAAAAGGCAGCGTGTTGTGCTGGGTGAACTTTCAAATTTTCCGAATGCAACTCAAAACAAACGCAAAGAGAAACTACAATGTCGGAAGAATCCAAATTTAAAGAAATCATCTCCCACAGAGTTCATATCCTCTTCCTCATCCCCACAGTTTGACCAACTTTATGTTTCCGACATCTTCGAGTATCTTCATGTGATGGAGATGCAGAGGAAGAGGAGGCCAATGATTGACTACATCGAGAAAGTTCAAAAAGAAGTTACTGTAATCATGAGGACAATATTGGTCGATTGGTTAGTGGAGGTAGCTGAAGAGTACAATCTTCACTCGGACACCCTTCATCTCTCTGTTTCATACATAGATAGATTTTTATCAGTGAATCCTGTTAGCAAGTCAAGACTTCAATTACTGGGTGTATCGGCCATGCTCATTGCTGCAAAGTATGACGAAGTTGACCCACCCCGTGTTGATGCTTTTTGCAACATTACTGACAACACATATCAGAAGGCAGAGGTTGTAAAGATGGAAGCTGACATACTCAAGTCTCTAAAGTTTGAGATGGGAAATCCTACTGTGAACACCTTTCTAAGGAGGTTTGTTGATGTTGCTTGTGATAACAAAAAGGCTTCAAATTTACAGTTTGAATTTCTAAGCTGCTATCTTGCTGACCTAAGTTTGTTGGACTATGATTGCTTGAGAATTTTGCCTTCTATTGTGGCAGCTTCAGCTGTATTTCTTGCCAGATTTATTATTGCTCCTGAAGTTCATCCTTGGACTTCTTCCTTGTCTGAGTGTTCTGGTTACAAATCAGTTGAACTGAAAGAATGTGTCATCATCTTGCATGACTTGTATTTTTCAAGAAAGGCGGCGTCTTTCAAAGCTGTCAGGGAGAAATACAAGCAGCACAAGTTCAAGTTCGTAGCAAGATTGCCTTCTCCTCCACATATACCAAGTCATTACTTTGAAACTCAGTGA 1047 0.4126 METRAAAKRKATAAAAPMVVVQKQHPKRQRVVLGELSNFPNATQNKRKEKLQCRKNPNLKKSSPTEFISSSSSPQFDQLYVSDIFEYLHVMEMQRKRRPMIDYIEKVQKEVTVIMRTILVDWLVEVAEEYNLHSDTLHLSVSYIDRFLSVNPVSKSRLQLLGVSAMLIAAKYDEVDPPRVDAFCNITDNTYQKAEVVKMEADILKSLKFEMGNPTVNTFLRRFVDVACDNKKASNLQFEFLSCYLADLSLLDYDCLRILPSIVAASAVFLARFIIAPEVHPWTSSLSECSGYKSVELKECVIILHDLYFSRKAASFKAVREKYKQHKFKFVARLPSPPHIPSHYFETQ* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1470 348 CDD CYCLIN 115 204 IPR013763 -
Vra5g1470 348 PANTHER CYCLIN-A3-1-RELATED 26 347 - -
Vra5g1470 348 SUPERFAMILY Cyclin-like 214 339 IPR036915 -
Vra5g1470 348 SMART Cyclin_C_2 214 337 IPR004367 -
Vra5g1470 348 Gene3D - 83 333 - -
Vra5g1470 348 CDD CYCLIN 214 305 IPR013763 -
Vra5g1470 348 ProSitePatterns Cyclins signature. 116 147 IPR006671 -
Vra5g1470 348 PIRSF Cyclin_A_B_D_E 1 346 IPR039361 -
Vra5g1470 348 SUPERFAMILY Cyclin-like 73 211 IPR036915 -
Vra5g1470 348 Gene3D - 97 212 - -
Vra5g1470 348 SMART cyclin_7 121 205 IPR013763 -
Vra5g1470 348 SMART cyclin_7 218 306 IPR013763 -
Vra5g1470 348 Pfam Cyclin, C-terminal domain 214 336 IPR004367 -
Vra5g1470 348 PANTHER CYCLINS 26 347 IPR039361 -
Vra5g1470 348 Pfam Cyclin, N-terminal domain 83 211 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1470 Vra-Chr5 21375785 21378604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1470 3 346 Core Cell Cycle Gene Families AT5G43080 55.491 1.94e-131 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1470 K06627 - gmx:100787417 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1825 6 34716243 34719523 Vra5g1470 5 21375785 21378604 PCT