LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g1467	ATGAGTGCTCCGTCGCGAGAAGAGGGGTCGAAAGAAGAGGAGAAAGACGAGGAGGCGAACCGGCTTCTAGAGGAAGCAGGAGCGGTATCGTCATCGGAAGAAGATGTGGCATACGAAGCGGGGGAGAAGATCCTGGTGGCGGATTTCGATTTTGACACAGTGGACGATGCGACAGTTCCTCCTTTCTCATGGAAGAAGCTGTGGCTCTTCACTGGGCCTGGGTTCTTGATGAGCATAGCTTTTTTGGATCCGGGGAATCTCGAGGGGGATCTCCAGTCTGGGGCCATCGCGGGCTACTCGCTCCTCTGGCTCTTGATGTGGGCCACCGTCATGGGCCTCTTGATCCAGCTTCTGTCCGCCAGGGTCGGGGTCGCCACGGGCCGCCACCTCGCTGAGCTCTGCAGGGATGAGTATCCCCATTGGGCCCGCCTTGTGCTCTGGTTCATGGCCGAGCTGGCCCTGATTGGCGCCGACATTCAAGAGGTAATTGGAAGTGCCATCGCCATCCAAATTCTTAGCCGAGGCTTCCTCCCTCTCTGGGTTGGAGTTCTAATCACTGCTTCCGACTGCTTTTTCTTTCTATTTCTTGAGAACTATGGTGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATTTCTATTATGGGTCTTTCATTTGCCTGGATGTTTGCTGATGCAAGACCTAATAGACAAGAGCTTTTAATGGGTATTTTGGTTCCGAGACTAAGCTCAAAAACAATTCGTCAAGCTGTGGGTGTTGTGGGTTGTGTCATCATGCCTCACAATGTATTCCTGCATTCTGCTTTGGTTCAATCAAGGAAGATTGATCCTAATAAGAAAGGTCGGGTACAGGAGGCTCTCAACTACTATTCAATCGAGTCATCAGCTGCACTTTCAGTCTCCTTCATGATCAATCTATTTGTCACAACAGTTTTTGCTAAGGGTTTTTATGGAACAAAGCAGGCAAAAGACATAGGACTCGTCAATGCAGGGCAATATCTTGAAGAAAAGTATGGAGGAGGAGTTTTCCCTATTCTTTATATATGGGGAATTGGGTTATTGGCAGCTGGCCAGAGTAGCACCATCACTGGCACATACGCTGGGCAATTCATAATGGGGGGTTTCCTCAACCTTCGTTTAAAGAAATGGATGAGAGCATTGATCACTAGAAGTTTTGCAATTGTGCCAACTATAATTGTAGCTATAGTTTTTAATAGATCAGAAGCATCCTTGGACATTTTGAATGAATGGCTCAATGTGCTTCAGTCCATGCAAATTCCCTTTGCTTTGATTCCCCTCCTCACATTGGTCTCCAAGGAGCAGCTCATGGGAACATTTAGAGTTGGACCTGTTCTTGAGAGAGTAGCATGGACTGTTGCTGGACTGATAATAGTGATTAATGGGTATCTCTTGTTAGATTTCTTCATTTCTGAAGTGAATGGCGTTTTGCTTGGTCTTTTAGCCTGCTCCTGCACGACAGCCTATATCGCGTTCATAGTATATTTGGTTTCACAGAGCGGTATTCTTCCTTCTGCATGGGTTAATCGTCTTCCCAAGGGATTTTCTTCAACTGGGAATTAA	1581	0.4725	MSAPSREEGSKEEEKDEEANRLLEEAGAVSSSEEDVAYEAGEKILVADFDFDTVDDATVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCRDEYPHWARLVLWFMAELALIGADIQEVIGSAIAIQILSRGFLPLWVGVLITASDCFFFLFLENYGVRKLEAAFAVLISIMGLSFAWMFADARPNRQELLMGILVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPNKKGRVQEALNYYSIESSAALSVSFMINLFVTTVFAKGFYGTKQAKDIGLVNAGQYLEEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSFAIVPTIIVAIVFNRSEASLDILNEWLNVLQSMQIPFALIPLLTLVSKEQLMGTFRVGPVLERVAWTVAGLIIVINGYLLLDFFISEVNGVLLGLLACSCTTAYIAFIVYLVSQSGILPSAWVNRLPKGFSSTGN*	527

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g1467	526	MobiDBLite	consensus disorder prediction	1	35	-	-
	Vra5g1467	526	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	65	443	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vra5g1467	526	Hamap	Divalent metal cation transporter MntH [mntH].	53	475	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vra5g1467	526	Pfam	Natural resistance-associated macrophage protein	88	449	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vra5g1467	526	PANTHER	BNAC08G04640D PROTEIN	27	515	-	-
	Vra5g1467	526	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	27	515	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vra5g1467	526	PRINTS	Natural resistance-associated macrophage protein signature	146	172	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vra5g1467	526	PRINTS	Natural resistance-associated macrophage protein signature	176	195	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vra5g1467	526	PRINTS	Natural resistance-associated macrophage protein signature	201	222	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vra5g1467	526	PRINTS	Natural resistance-associated macrophage protein signature	250	273	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vra5g1467	526	PRINTS	Natural resistance-associated macrophage protein signature	357	376	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vra5g1467	526	PRINTS	Natural resistance-associated macrophage protein signature	385	402	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vra5g1467	526	PRINTS	Natural resistance-associated macrophage protein signature	419	438	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Vra5g1467	526	MobiDBLite	consensus disorder prediction	1	23	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g1467	Vra-Chr5	21353660	21357598	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra5g1467	7	506	Inorganic Solute Cotransporters	AT1G47240	78.685	0.0	811

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g1467	K21398		-	gmx:100791117	936.791

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra5g1467	5	21353660	21357598	Vra5g1467	5	21353660	21357598	ECH