Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1448 ATGGCTCCTACGCCTGAGCCTCCACGAATCAACATTGAACCTGAATATTGCCCTGAAGCGGTGAGGCAATGGTACTACCTCGCATCACTGCCAAGTAACAGGAGAGAATCTTCATTAAGCAGGGACCTCTCCTTAAAAGTTAAGAAACATCTTCTTTATCTGGGTTGGAAATTTTGGCATATTAAGAAGAAAGATAAGTGGGAGCTGCGTTACACATCACCCATCAATGGCAAGAATTACATTTCTCTCGCAAGGGCATGTAAAGCTTGCATAGAAGAGGGAGGTTGCAATGAAAACCCTCAAGATTTTCAAGAAAACAACGTTCTTCTCGAATATCCTATTTCTTCTCAACCAAATAAGGAGACAAGAGAATCCAAAAAGAGAACTAGGGTGTGCAAGAAAAGGGAAAAGGATGATCACGATGATGAGTTGGGAGAAGGCTCTAGTTCTACGAATGGTAGAAGAGGTAAGCCTGCGCCGTCGATCAAAACAACGACGCAAGAGGGTGAGGCACCAGTTTCTAAGTCTTCACAACACCAACGTGGAACTCTTATCCCTTGGTTGATAAAAAACGGTGTTGTGGGTTTAGATTCCGTGGTAACCTGCCATGGTGCAAATGGCGTGGTCAAGAAAGGGAAGCTGTCGTACGGTGGCATATGTTGTGATTGCTGTGACAAGTTCTTTTCTCCCACTCGCTTTGAGGCTCATGCCAGGTGTCAAAAACACAGACCAAATTCTAGCATTTTCTTGGAAGATGGAAGGTCATTGTTAGATTGTAAAAACGAGGCCCTAAGTTCTAAGCAAAATGGGTTTGTGAAAGAAGATGAAATCGATGACTGTGGTTATCCAAATGATAGCACTTGTGCTGTTTGTCGTTACGGTGGTGAACTGGTGTTGTGTGATGGATGCCCGTCTTCGTTCCACCTCAAGTGTTTAGGTTTAAGCGTTGTTCCTGATGGTGATTGGTTCTGCCCAGTTTGTTGTTGCAAAATATGCAGGCGACCTAGATGCAGAGACGACCGTGCTCATAATGTGGGTGTTAACAGAATTTTAGTTTGTCCTCAGTGTGAGAGAAAATTCCATTTTGGATGCTTAAAGGCTCAAGCCTCGTCATATACCAAGTTGGAAAAGGAAGAAGACCGTGTTGGTAGTAGGAATTGCTTTTGCAGTAGAGACTGCGAGGAGATATTTTCCGGTCTGCAGGAGCTTTTGGGAAAAGCCATTAATGTTGTTGATGCAGATGATGTTACTTGGACGCTGTTGAAGGCAGTGAGAAGGGATAGCAGTGGAGAAGAATATCTTAATTTGGATGAAGTTGAAGGTTTGAGTGAAAACGAAAGGAAGCTAAGTGTAGCTCTTGATGTATTACGTGGGAGTTTTGACCCGATTATTGACGCTTTTTCTGGTAGAGATTTGATAGCTGATGTTGTTTTCAGCAGAGGGTCAGAAGTGGATCGGTTGAACTTTGGTGGATTTTATACTGTGGTTCTGGAGAGGGAGAAGGAGGTGATTTCTGCTGCTACTGTGAGGATTTTGGGGAAGAGGGTTGCGGAAATTCCCTTTGTGGCTACTAAGATGGAGTGTAGAAGACAAGGAATGTGTAGCATGTTGATGAATGAGATTGAAAAACAGTTAAGTTACTTGGGAGTGGAGAGGTTGGTTCTGCCATCCTCGTGCAGTGCGTTAAACACATGGACAAAATCATTTGATTTTGTAAAGATGAAACCTTCAGATAAGTCTAAGCTACTTGATTTTGTTTTTCTTACCTTCGAGGGTACCATCCTCTGCCACAAACCTTTGTTGCAAGAAACTTATGTATGA 1821 0.4305 MAPTPEPPRINIEPEYCPEAVRQWYYLASLPSNRRESSLSRDLSLKVKKHLLYLGWKFWHIKKKDKWELRYTSPINGKNYISLARACKACIEEGGCNENPQDFQENNVLLEYPISSQPNKETRESKKRTRVCKKREKDDHDDELGEGSSSTNGRRGKPAPSIKTTTQEGEAPVSKSSQHQRGTLIPWLIKNGVVGLDSVVTCHGANGVVKKGKLSYGGICCDCCDKFFSPTRFEAHARCQKHRPNSSIFLEDGRSLLDCKNEALSSKQNGFVKEDEIDDCGYPNDSTCAVCRYGGELVLCDGCPSSFHLKCLGLSVVPDGDWFCPVCCCKICRRPRCRDDRAHNVGVNRILVCPQCERKFHFGCLKAQASSYTKLEKEEDRVGSRNCFCSRDCEEIFSGLQELLGKAINVVDADDVTWTLLKAVRRDSSGEEYLNLDEVEGLSENERKLSVALDVLRGSFDPIIDAFSGRDLIADVVFSRGSEVDRLNFGGFYTVVLEREKEVISAATVRILGKRVAEIPFVATKMECRRQGMCSMLMNEIEKQLSYLGVERLVLPSSCSALNTWTKSFDFVKMKPSDKSKLLDFVFLTFEGTILCHKPLLQETYV* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1448 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 345 IPR013083 -
Vra5g1448 606 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 601 - -
Vra5g1448 606 MobiDBLite consensus disorder prediction 120 148 - -
Vra5g1448 606 Pfam Acetyltransferase (GNAT) family 488 571 IPR000182 GO:0016407
Vra5g1448 606 Gene3D - 450 599 - -
Vra5g1448 606 Pfam PHD-finger 288 329 IPR019787 -
Vra5g1448 606 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 9 601 - -
Vra5g1448 606 SUPERFAMILY FYVE/PHD zinc finger 274 338 IPR011011 -
Vra5g1448 606 MobiDBLite consensus disorder prediction 111 179 - -
Vra5g1448 606 MobiDBLite consensus disorder prediction 149 179 - -
Vra5g1448 606 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 439 593 IPR000182 GO:0016407
Vra5g1448 606 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 484 567 IPR016181 -
Vra5g1448 606 Pfam Tify domain binding domain 212 263 IPR032308 -
Vra5g1448 606 SMART PHD_3 287 328 IPR001965 -
Vra5g1448 606 SMART PHD_3 329 393 IPR001965 -
Vra5g1448 606 CDD NAT_SF 495 555 - -
Vra5g1448 606 ProSiteProfiles Zinc finger PHD-type profile. 285 330 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1448 Vra-Chr5 21186149 21187969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1448 43 548 PHD Transcription Factor Family AT5G58610 34.175 1.86e-88 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra5g1448 Acetyltransf_1 4.8e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1448 - - vra:106760454 1224.15