Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1434 ATGCCTCCGTACCAAGAAGACCTACTGGCAACACAGACAACAACCACAACGCCAACCATGAAGGATGCCGATGGTGCTAACGTTTTGGATCTGAAAACGTTGATTGAGGAGCTTGAATCATCGATTGAGGTCCCTTCCGTTTTTATCTGCCCAATCTCGCTCGAGCCAATGCAAGACCCCGTCACCCTTTGCACGGGACAAACCTACGACCGTTCCAACATCCTCAAATGGTTCTCCCTCGGCCACAACACCTGCCCCACCACAATGCAAGACCTCTGGGACGATTCCGTCACGCCCAACACCACTCTCCACCACTTCATCCTCTCCTGGTTCTCGCAGAAGTACTTGGCCATGAAGAAGAAGCTCGAGGACGTGCAAGGCACCGCCTTGGAGCTCCTCGACACCCTCAAAAAGGTCAAGGGTCAAAACAGAGTTCGCGCCCTCAAACAGCTTCGCAAACTCGTTGATTCCCATCTCTCCACCAGGAAAACCGTCGAGGAAAACAACGGGCTTGCTTTGATTTCTTCCCTGTTGGGTCCTTTCACCTCGCACGCGGTTGGGTCGGAAGCGATTGGGATTCTTGTCAATTTGGATTTGGGTTCGGAGCTGAAGAGGAATCTCATGCAACCCGCGAAGGTGTCTTTGTTGGTGGACATCATGAACGAGGGAACCATCCAGACCAAGATGAATTGCGCCAAGTTGATTCAAATGTTGTTGGTGGAAGGTAACCCCTCCGAGACCGTTGTCTTATCAAGTTTGAGTCTTTTGGTCGGGGTTTTAAGGTTAGTGAGAGATAAAAAGCACCCAACAAGCGTTTTAACCGGACTCATATTACTAAAAATTGTGTGTTCGCGTGAATCGGTTAGAAGCACAATTGTAAGCATAGGAGCAGTGCCTCAGCTGATTCAGCTTTTGCCCACTTTGAACAACGAGTGTTTAGAGATAGCCCTCAACATTCTGGAAGTCTTGTCAACACTTCCTGAGGGAAGATTGGCTTTGAAAGAGTGTCCCAATATTATTCCCAGTGTGGTGAAGTTGTTGATGAGAGTCTCAGAAAGTTGCACACAATTTGCATTGTCGATTTTGTGGGCTATTTACAAGCTTGCCCCTGAAGAATGTGCTTCAAAAGCTGTCGAAGCAGGGTTGGCGGCGAAGCTACTTCTAGTTATTCAGAGTGGTTGCAACCCGGTACTAAAGCAGAAATCTGCGGAGTTTTTGAAAATGTGCAGTTTAGATTACTCTTCTAGTATCTTGATTTCTAAGTGTATGCTTACTGCCACAATACAATGA 1290 0.4775 MPPYQEDLLATQTTTTTPTMKDADGANVLDLKTLIEELESSIEVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQDLWDDSVTPNTTLHHFILSWFSQKYLAMKKKLEDVQGTALELLDTLKKVKGQNRVRALKQLRKLVDSHLSTRKTVEENNGLALISSLLGPFTSHAVGSEAIGILVNLDLGSELKRNLMQPAKVSLLVDIMNEGTIQTKMNCAKLIQMLLVEGNPSETVVLSSLSLLVGVLRLVRDKKHPTSVLTGLILLKIVCSRESVRSTIVSIGAVPQLIQLLPTLNNECLEIALNILEVLSTLPEGRLALKECPNIIPSVVKLLMRVSESCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSAEFLKMCSLDYSSSILISKCMLTATIQ* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1434 429 Pfam U-box domain 44 114 IPR003613 GO:0004842|GO:0016567
Vra5g1434 429 ProSiteProfiles U-box domain profile. 43 117 IPR003613 GO:0004842|GO:0016567
Vra5g1434 429 SUPERFAMILY ARM repeat 132 412 IPR016024 -
Vra5g1434 429 SMART Ubox_2 47 110 IPR003613 GO:0004842|GO:0016567
Vra5g1434 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 126 IPR013083 -
Vra5g1434 429 PANTHER WDSAM1 PROTEIN 19 428 IPR045185 GO:0061630
Vra5g1434 429 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 19 428 - -
Vra5g1434 429 Gene3D - 129 275 IPR011989 -
Vra5g1434 429 SUPERFAMILY RING/U-box 41 114 - -
Vra5g1434 429 CDD RING-Ubox_PUB 48 90 IPR045210 -
Vra5g1434 429 Gene3D - 276 426 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1434 Vra-Chr5 21067677 21069735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1434 29 429 U-box Gene Family AT3G49810 64.090 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1434 - - gmx:100808281 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1434 5 21067677 21069735 Vra5g1434 5 21067677 21069735 ECH