Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1428 ATGAATTTGAAGATGGATTCCGATAGGGCGAAGCTGTTCGTAGGGGGCATTTCTCGTGAAACCACCGAAGATGTTCTCAAATTCCACTTTGCCAAGTACGGTACCGTTTTGGACTCCACAATATCCGTAGACCACAGCACCCGATGCCCTAGAGGTTTCGGCTTCGTCACCTTCTCTGACCTCTCCGCCGCCGATAAAGCCCTGCACGACACGCATGTCATTCTCGGAAGAACGGTAGAAGTAAAGAAAGCAATTCCAAGGAGTGAACAACAGCAACACCAAAACCAGTTACATAATAGAGGCGGAGGTAGCTATAGTAGTAGTTGTGACTGTAGTAGTGACACCAACGTTAGGACTAAAAAGATTTTTGTTGGGGGTTTACCTGCTGGTATATCTGAGGAGGAGTTTAAGCAATACTTTGAGAGGTTTGGTCGGATAACTGACGTTGTGGTGATGCAGGACAGTGTTACTCACCGGCCAAGGGGATTTGGGTTCATCACCTTTGATTCCGAGGAATCGGTTCAAAGTGTTATGGTGAAGAATTTTCATGACTTGAATGGTAGACAGGTCGAGGTCAAGAGGGCCGTTCCTAAAGAGGGGAATCATGGTTATGATGGTTTTAGTAAATTGAGAAGTAAGAGTGAAAGAGGAGTTCCTAAAAGTTTTCCTCCTTACAGTCCTAGGAATATGCTTCCGGGTCTTGCTCCTTTGCCGTGGTATGGTAGTGATGGAGTATATGCATATGGTTCTAATGCTTACGGTTGTTGGTACCCTATGGGTGGGTATGGGGGGAACGGATATGCGATTCCGTCTGAAGCTTCTAGGAACTTCTGGTACGGGCCAATGATGGCTGGTCCTCAGGCATGTCAGGTGCCTTATGCTAGTGCTATTCCAAACTTAGCGTGGGGTAGGATTGGAATAGTAGGTAGTGGTCTAGGATCTTGGGGGTATGGTGGCATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAACCTTTTATTGGCAACGGATTTTTTCCAGGCAACACGACATTGCATCATGGTGTAAAGCAGAATGTTGTGGACTCTTCGAGTTTGAAAGGGAGCAATGGTGAAATATCTAGCTGA 1107 0.4598 MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADKALHDTHVILGRTVEVKKAIPRSEQQQHQNQLHNRGGGSYSSSCDCSSDTNVRTKKIFVGGLPAGISEEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKNFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFPPYSPRNMLPGLAPLPWYGSDGVYAYGSNAYGCWYPMGGYGGNGYAIPSEASRNFWYGPMMAGPQACQVPYASAIPNLAWGRIGIVGSGLGSWGYGGILGSATNLKFDQPFIGNGFFPGNTTLHHGVKQNVVDSSSLKGSNGEISS* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1428 368 SUPERFAMILY RNA-binding domain, RBD 6 108 IPR035979 GO:0003676
Vra5g1428 368 MobiDBLite consensus disorder prediction 202 216 - -
Vra5g1428 368 SMART rrm1_1 121 193 IPR000504 GO:0003723
Vra5g1428 368 SMART rrm1_1 11 82 IPR000504 GO:0003723
Vra5g1428 368 MobiDBLite consensus disorder prediction 86 106 - -
Vra5g1428 368 SUPERFAMILY RNA-binding domain, RBD 116 205 IPR035979 GO:0003676
Vra5g1428 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Vra5g1428 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Vra5g1428 368 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 366 - -
Vra5g1428 368 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 366 - -
Vra5g1428 368 MobiDBLite consensus disorder prediction 202 222 - -
Vra5g1428 368 Gene3D - 2 97 IPR012677 -
Vra5g1428 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Vra5g1428 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 78 IPR000504 GO:0003723
Vra5g1428 368 MobiDBLite consensus disorder prediction 88 106 - -
Vra5g1428 368 Gene3D - 116 204 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1428 Vra-Chr5 21011625 21014552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1428 6 258 Eukaryotic Initiation Factors Gene Family AT3G16380 27.237 1.37e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1428 K14411 - gmx:100816822 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1428 5 21011625 21014552 Vra5g1428 5 21011625 21014552 ECH