Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1419 ATGGTCTTAGGTACCTCTAACCTTCAACTAGGTCTTGGTCTTGGCCTCCAAGATCAGTCACAAGAAACATGCATGAAGAGCCATGAGCAAAGGCAAAGACAAAGACAAAGCCAGAAAAAGAAGGATTCCAATGAATGTTTTAATTTTCACCGTCGTGCTTCTCCTCCAAGTGCAGTGTCTTCGTTTCTTAACTCATCAAGCATCATCAAGAGAGAGCGAGATGAGTTCGCGGGTGAAGAATTTGAGTTAGAGGTAGAGAAGTTTCCCTCAAACTTAAGAGTTGTGGATCTTGATGAATATGGTTACTCCAAGAAGAAGCTTAGGCTCACCAAAGAACAATCTGCAGTCTTGGAAGATAGCTTCAAAGACCATTCTACTCTCACTCTGACACAGAAGCAAGGATTGGCAAAGAAACTGAATCTGCGAGCGAGACAAGTGGAAGTATGGTTTCAGAATAGGAGAGCAAGGACAAAACTGAAGCAAACGGAAGTGAACTGTGAGATACTGAAAAAGTGCTGCGAAAGTCTAACAGAGGAGAACAAGATGTTGAAAAAAGAGTTGGAAGACCTTAAATCGATGAAAACAGCATTGCAGGGACCCCTTTTTATGCAGCTTCCAGTGCCAACACTTACAATATGCCCTTCCTGTCAGAGAATTTCCGGTGGCAGCGCCGCCACCACTAACACTGCCTCCTCTCCTACCACCACCACCACCACCTTGCTTGTGGGCCCAAAGCCCCATCACGATCACCACTTCTATAAAAATAACTATACATTCACACAATCATCTGCAGCTTGCTAG 801 0.4432 MVLGTSNLQLGLGLGLQDQSQETCMKSHEQRQRQRQSQKKKDSNECFNFHRRASPPSAVSSFLNSSSIIKRERDEFAGEEFELEVEKFPSNLRVVDLDEYGYSKKKLRLTKEQSAVLEDSFKDHSTLTLTQKQGLAKKLNLRARQVEVWFQNRRARTKLKQTEVNCEILKKCCESLTEENKMLKKELEDLKSMKTALQGPLFMQLPVPTLTICPSCQRISGGSAATTNTASSPTTTTTTLLVGPKPHHDHHFYKNNYTFTQSSAAC* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1419 266 Pfam Homeodomain 104 158 IPR001356 GO:0003677
Vra5g1419 266 ProSitePatterns 'Homeobox' domain signature. 135 158 IPR017970 GO:0000981|GO:0006355
Vra5g1419 266 ProSiteProfiles 'Homeobox' domain profile. 100 160 IPR001356 GO:0003677
Vra5g1419 266 PANTHER - 42 265 - -
Vra5g1419 266 MobiDBLite consensus disorder prediction 24 48 - -
Vra5g1419 266 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 42 265 - -
Vra5g1419 266 SUPERFAMILY Homeodomain-like 98 161 IPR009057 -
Vra5g1419 266 CDD homeodomain 104 161 IPR001356 GO:0003677
Vra5g1419 266 SMART HOX_1 103 164 IPR001356 GO:0003677
Vra5g1419 266 SMART halz 160 205 IPR003106 GO:0006355|GO:0043565
Vra5g1419 266 Coils Coil 159 193 - -
Vra5g1419 266 MobiDBLite consensus disorder prediction 23 60 - -
Vra5g1419 266 Gene3D - 99 165 - -
Vra5g1419 266 Pfam Homeobox associated leucine zipper 160 194 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1419 Vra-Chr5 20889905 20891721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1419 98 266 Homeobox Transcription Factor Family AT4G37790 58.824 4.83e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra5g1419 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1419 K09338 - gmx:100790927 286.574