Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1414 ATGACACCCAATGTTCAAATACCCCTCTGGGACTCCGCCGCCGCAGACGGAGGACCGGTCTCCCCGTTCTCTCCCAATGCGCCCGACACCGTCTCCTTCTCCACCGATCATTTCCGGATGTTCCACTTCAAGGTCCTCACCTGTCCACGTGGCAGGGCCCACGACTGGACCGAGTGTCCCTACGCCCACCCCGCCGAGAAGGCTCGCCGCCGGGACCCCCGCAAGTTCCTCTACTCCGCCACGGCATGCCCTGATTACCGGAAGGGGAACTGCAAGAGGGGTGACACGTGTCAGTTCGCGCATGGCGTGTTCGAGTGCTGGCTCCACCCTTCTCGCTACAGAACCCACCTCTGTAAAGACGGGACTAACTGCCGCCGCAGAGTTTGCTTCTTCGCTCACACCAACGACCAGCTCCGCCTCGCACCCGATTCGTCCTCTCTTTCCTCTCCCACTTCGGTTATCACCTCTTCCTTCTTCGATTCTCCACCCTCTTCTTCTTACGTCCACAACATACAAGAGATAGTTAGTTCAATGCGGAATGTTCAACTGGAGGATGGACTTTTCTCGGGTTTGACCCGGTGCGTGTTCGGGTCAACAAGTGGCGGTATTTTGAGTGGTAATGGGTGTGAGGAAGAAGAGCCTGCTATGGAGAGAGTGGAATCTGGGAGAGATATTAGGGCGAGAATATACGCGAAGCTTAGCAGGGAGAATTCCTTTGCAGGTTCTGCTCCTCACGTTGGATGGGTCTCGGAACAGGTGAATGGATTCCGGGGCCTTTGA 780 0.5667 MTPNVQIPLWDSAAADGGPVSPFSPNAPDTVSFSTDHFRMFHFKVLTCPRGRAHDWTECPYAHPAEKARRRDPRKFLYSATACPDYRKGNCKRGDTCQFAHGVFECWLHPSRYRTHLCKDGTNCRRRVCFFAHTNDQLRLAPDSSSLSSPTSVITSSFFDSPPSSSYVHNIQEIVSSMRNVQLEDGLFSGLTRCVFGSTSGGILSGNGCEEEEPAMERVESGRDIRARIYAKLSRENSFAGSAPHVGWVSEQVNGFRGL* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1414 259 SUPERFAMILY CCCH zinc finger 76 106 IPR036855 GO:0046872
Vra5g1414 259 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 102 IPR000571 GO:0046872
Vra5g1414 259 ProSiteProfiles Zinc finger C3H1-type profile. 77 104 IPR000571 GO:0046872
Vra5g1414 259 Gene3D - 77 140 - -
Vra5g1414 259 SMART c3hfinal6 77 103 IPR000571 GO:0046872
Vra5g1414 259 SMART c3hfinal6 112 135 IPR000571 GO:0046872
Vra5g1414 259 PANTHER UNKEMPT FAMILY MEMBER 28 186 IPR045234 -
Vra5g1414 259 PANTHER UNKEMPT FAMILY MEMBER 207 253 IPR045234 -
Vra5g1414 259 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 28 186 - -
Vra5g1414 259 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 207 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1414 Vra-Chr5 20846539 20847766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1414 22 160 C2H2 Transcription Factor Family AT5G12850 60.000 8.16e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra5g1414 zf-CCCH 8.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1414 - K23048 gmx:100786368 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1414 5 20846539 20847766 Vra5g1414 5 20846539 20847766 ECH