Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1406 ATGGGTATCTGCATATCCTCTGAATCTTCAGCGATTCATGGAGCGCCTGAAGAAGCTCGTGACGAAAATGTGTTTGTGTTTGAAGCAACCAAGCTTCTCAGGGGACTTTCCTCTGCTTACTCTAAACAAGGTACCAAAGGGCTCAACCAAGATGCTGCAACACTTTGTCAGGTTTATGGGACGGCAAACGCAGCATTCTGTGGAGTTTTTGATGGGCATGGAAGGAATGGTCACATAGTGAGCAAAATAGTGAACAGCCGTTTGTGTTCACTCATAGTGGACCATAAAAAAGTGCATGCAAAGATTGATAAGAAGAACATCACAAGGCATGTGGAGACAGTTGAAGAGGACTCACAAGCTCTACTAAACAAGAATTTTGAAGAATGGAAAGAAGCCATTCTTGATGGTTTCAGGGTGATGGACAAGGAAGTGAAGCTACAAGAGAATCTGGACTGCTCTTGCAGTGGAACTACGGCTGTAGTTGTCATAAGACAGGGTGAAGATGTTGTCATAGCTAACCTTGGTGACTCTAGAGCAATCTTGGGGACAATCTCTGACGGTGAAATCATGCCCATTCAATTGACGACGGATATGAAACCTGGATTACCTTGCGAAGCGGAACGAATAAAAAGTTGCAATGGCCGTGTATTTGCCCTGAAGGAAGAACCACACATCCAGCGAGTGTGGTTACCCGATGAGAACTCTCCAGGTCTGGCCATGTCTCGGGCTTTTGGAGATTTCATGCTCAAAGACCACGGCATCATTGCCATCCCTGAAATTTCGCATCGCACTCTAACATCTACCGACCAATTTATTGTTCTTGCAAGTGATGGGGTGTGGGATGTGCTAAGCAACGAGGAGGTTTCCTCAATAGTGTGGGCAGCAGACACTGAAAATGAAGCAGCAAGGGCTGTTGTGGAAGCAGCAGCGTTAGCATGGAAAAGCAAGTATCCTTCTTCTAAGTTAGATGACTGCACAGCCGTTTGCCTCTTCCTACAGAAGAAACCCTCATAA 1014 0.4576 MGICISSESSAIHGAPEEARDENVFVFEATKLLRGLSSAYSKQGTKGLNQDAATLCQVYGTANAAFCGVFDGHGRNGHIVSKIVNSRLCSLIVDHKKVHAKIDKKNITRHVETVEEDSQALLNKNFEEWKEAILDGFRVMDKEVKLQENLDCSCSGTTAVVVIRQGEDVVIANLGDSRAILGTISDGEIMPIQLTTDMKPGLPCEAERIKSCNGRVFALKEEPHIQRVWLPDENSPGLAMSRAFGDFMLKDHGIIAIPEISHRTLTSTDQFIVLASDGVWDVLSNEEVSSIVWAADTENEAARAVVEAAALAWKSKYPSSKLDDCTAVCLFLQKKPS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1406 337 Pfam Protein phosphatase 2C 120 309 IPR001932 -
Vra5g1406 337 SMART PP2C_4 29 330 IPR001932 -
Vra5g1406 337 ProSiteProfiles PPM-type phosphatase domain profile. 36 332 IPR001932 -
Vra5g1406 337 PANTHER ALPHABET, ISOFORM E-RELATED 1 336 - -
Vra5g1406 337 CDD PP2Cc 37 299 IPR001932 -
Vra5g1406 337 Gene3D - 27 335 IPR036457 -
Vra5g1406 337 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 336 - -
Vra5g1406 337 SUPERFAMILY PP2C-like 33 333 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1406 Vra-Chr5 20779054 20780792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1406 1 335 PP2C-type Phosphatase Gene Family AT5G26010 50.725 5.51e-104 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1406 - - gmx:100795893 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1406 5 20779054 20780792 Vra5g1406 5 20779054 20780792 ECH
Vra6g1753 6 33745390 33748537 Vra5g1406 5 20779054 20780792 PCT