Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1400 ATGGAGAGAGAGATGTATATCGCTCCACTGGAGATTTCTGGTCGAGGTGATACAGTAATAGATGAAATATCCCAACATCCCACCTCAAATCCTCTCATTCAGTGCTATTCACTTGACCTTAACAACCAATCCCACATCATAAATGGAATTTCAATGCTTTCTGGAGAGCAAGGTGAACCTACAAGTAATGTCCATACTGATGCTTGCTTCATTACTCCATCAACTATTGCTGACTCCTGTCCATTAGTTACATCACGGAGAAAGATTATTGTGGGAGATGCCTCAAATCCCATGGAGAACTCTGATTTTCAAGAGCATTTAGTTGGAGGAGTGCCCCTCACTCCTGCTTCGCTAGCTGCCATTCTTGCTGATAGAATTGGACTTGAAGAAAATTTGGAGAATTCAGCCGCCGCCCTAGCTCCCTCAATCTTCTCCACGGGGGCACTAGAGGTATTCTTCAACAATTTGCATGGTACTTCAAACCCTTTGTCTGGAATTTTTGAGGAGTGTGGGTACAATGAAGGTCCTAGTAAGTGGAATGCTAACAAATTTCCTAAAGCTCCAGAGAATGATGGAACTTGTCAGCCTTATTCTTCTGTGGCAAACTTGGATCCAAATGAATGGGCAACATCAAACGTTGCAAACATGGCCAATTATGCTCACTATTCCTCTACTTTTAGTAAAGAACTTTCTCTGAGTCTTGCAACATCTACAGCCGCAGGACAGTGCTCAAACGTGACTTGCTCTAATATGACCCCGTGCATGAATGGAACCATTTCCTGCAGCAGTAGTAGGGAAATTTCTATGAATTTGGGTGGTAATAAATATGCACAAATTTCACCGGAAGTACTGGAATCGAGATACCTTCTTGGGATTCAAGAGATACTTGCTCAAGTTGCAAGATATTCATTTCAAAATCCTGAACAGTTAAACTATTCAGCCACTGGTAATAGAGCAGGTGGACACAAGTCAACTTCAGCGTTTCCACCCAAGAGAAACATCTTGACAGATCACAATGCAAGTTCTGTTTACGAATCTCATGCAGAGTCTCCATTGCAAAGGCAGGCTTCTGAATCTAAGAAAGCTCAACTGCTGGCACTTCTACAACTGGTGGACAGTCGATACAGCCAGTGTTTGGATGAGATACATACTGTTGTATCTGCATTCCATGCAGCTACCGAGCTGGACCCACAGATACATGCACATTTTGCTCTTCAAACCATCTCTGTCCTTTACAAGGACTTACGGGAGAGGATTAGCAACTACATTCTTGCCATGGGATCAAGCTTCAAAAAATCGTGCACGGAAGACAGTGAATGGTCCATTGAAACTTCATTCCTTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCAGCTGTGGAGGCCCCAGAGAGGCTTGCCGGAAAGATCTGTCTCGGTTCTACGGGCATGGATGTTTCAGAATTTCCTACACCCGTATCCCAAAGATGCAGAGAAGCATTTACTTGCAGTGAAAAGTGGGTTGACTAGAAGTCAGGTATCCAACTGGTTTATAAATGCTCGTGTGCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAAATGAACAAAAGAAAGGCCTGTCGAAATGAAGAAGAAATCCAGAATAACCATGGAAACAGGATAAGCATGAGTAATCAAAGGTTTAATGTTAACTAA 1689 0.4287 MEREMYIAPLEISGRGDTVIDEISQHPTSNPLIQCYSLDLNNQSHIINGISMLSGEQGEPTSNVHTDACFITPSTIADSCPLVTSRRKIIVGDASNPMENSDFQEHLVGGVPLTPASLAAILADRIGLEENLENSAAALAPSIFSTGALEVFFNNLHGTSNPLSGIFEECGYNEGPSKWNANKFPKAPENDGTCQPYSSVANLDPNEWATSNVANMANYAHYSSTFSKELSLSLATSTAAGQCSNVTCSNMTPCMNGTISCSSSREISMNLGGNKYAQISPEVLESRYLLGIQEILAQVARYSFQNPEQLNYSATGNRAGGHKSTSAFPPKRNILTDHNASSVYESHAESPLQRQASESKKAQLLALLQLVDSRYSQCLDEIHTVVSAFHAATELDPQIHAHFALQTISVLYKDLRERISNYILAMGSSFKKSCTEDSEWSIETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEEIQNNHGNRISMSNQRFNVN* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1400 562 Pfam Homeobox KN domain 480 519 IPR008422 GO:0003677|GO:0006355
Vra5g1400 562 ProSiteProfiles 'Homeobox' domain profile. 460 523 IPR001356 GO:0003677
Vra5g1400 562 PANTHER HOMEOBOX PROTEIN ATH1 12 559 - -
Vra5g1400 562 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 12 559 - -
Vra5g1400 562 Pfam Associated with HOX 283 420 IPR006563 -
Vra5g1400 562 SUPERFAMILY Homeodomain-like 465 532 IPR009057 -
Vra5g1400 562 CDD homeodomain 463 524 IPR001356 GO:0003677
Vra5g1400 562 SMART prehox3 277 421 IPR006563 -
Vra5g1400 562 MobiDBLite consensus disorder prediction 313 332 - -
Vra5g1400 562 SMART HOX_1 463 527 IPR001356 GO:0003677
Vra5g1400 562 Gene3D - 466 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1400 Vra-Chr5 20730949 20734488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1400 229 547 Homeobox Transcription Factor Family AT4G32980 55.590 2.40e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra5g1400 POX 2.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1400 - - gmx:100820354 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1400 5 20730949 20734488 Vra5g1400 5 20730949 20734488 ECH
Vra6g1749 6 33719011 33722856 Vra5g1400 5 20730949 20734488 PCT