Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1398 ATGGGAATAGCCAGAAAATGTTCATATTGTGGAAAATTAGGTCACAATTCAAGGACTTGTAAAAGTCCTCTCGGTCACGGATACCTGAAGCTCTTTGGAGTGCAGCTTGACATTTCTTCTTCTTCTTCATCTTCTACTGTTTCCTTTTCTTCACCTTCATATTCTGCCATGACCAACCACTTCTTCTCTTTATCTCCTTCCTTTCGTGATCAAAATCAAAATTCAGATGCTTACTTACTCACTGCCAACACCCTCCTATCGAGAATTCAAGACACAAAAAAAGGTGTGGCATGGACAGAGGAAGAACACAGGGTGTTTCTCTTAGGGCTACAGAAGCTGGGGAAGGGAAACTGGAGAGACATATCGAAAAGTTTTGTCAAAACAAGAACACCTGTGCAAGTTGCAAGTCATGCACAGAAGTATTTTCTCCGACAATCTCACAAAACAAAACACCCTCGTACCTTGTTCCAGCTCCCTTCCTCTTCAACTTCCACTTCATCTTCATCTAATTGCACTGCTCCGATGCCACACCCAGATTTAGAACTCAAACTCGCAACTCCCACGCCATTGGAGCTATATATAGCAGATGCATGA 594 0.4259 MGIARKCSYCGKLGHNSRTCKSPLGHGYLKLFGVQLDISSSSSSSTVSFSSPSYSAMTNHFFSLSPSFRDQNQNSDAYLLTANTLLSRIQDTKKGVAWTEEEHRVFLLGLQKLGKGNWRDISKSFVKTRTPVQVASHAQKYFLRQSHKTKHPRTLFQLPSSSTSTSSSSNCTAPMPHPDLELKLATPTPLELYIADA* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1398 197 Gene3D - 98 147 - -
Vra5g1398 197 SMART sant 94 144 IPR001005 -
Vra5g1398 197 PANTHER TRANSCRIPTION FACTOR KUA1 4 166 - -
Vra5g1398 197 SUPERFAMILY Homeodomain-like 92 146 IPR009057 -
Vra5g1398 197 MobiDBLite consensus disorder prediction 152 174 - -
Vra5g1398 197 MobiDBLite consensus disorder prediction 148 180 - -
Vra5g1398 197 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 93 145 IPR006447 GO:0003677
Vra5g1398 197 Pfam Myb-like DNA-binding domain 97 142 IPR001005 -
Vra5g1398 197 ProSiteProfiles Zinc finger CCHC-type profile. 5 22 IPR001878 GO:0003676|GO:0008270
Vra5g1398 197 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 166 - -
Vra5g1398 197 CDD SANT 97 142 IPR001005 -
Vra5g1398 197 ProSiteProfiles Myb-like domain profile. 90 142 IPR001005 -
Vra5g1398 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 146 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1398 Vra-Chr5 20715803 20717814 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra5g1398 Myb_DNA-binding 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1398 - - pvu:PHAVU_009G077300g 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1398 5 20715803 20717814 Vra5g1398 5 20715803 20717814 ECH