Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1396 ATGTCGTTGGAACAAGTTACTTGTGAGGTGAACAACGACTCCATTGACAATGTCAATGATATTGTCCCTAAACTTCATATGTGGTTTGATACAATTGAAGAGGTCAAAACTTTTTACACAGACTACGTTGTGAAGTGCGGTTTTGGTGTTCGAATAAGGACCTCTAAGAGAAGCAAGAACAACGAGTTAAACTTCATGAAATTAGTGTGTTGTAGGGAAGGGAAATACATATCTCCCATTGCTCCAGAATTGAAAACTCAGCCAAGTCAAAAAACTGAATGTCCTGCTGGCATAACAGTTGCTATGAAAGAAGGAAGATGGCAGGTGAGAACAGTTGTTATTGAACACAGCCATGACATGTGTCCGAATAACTCCAACCTCATACGTGGTAATCGAAGACTTAATATGCATGCAAAGCACACCCTTAATATGAATGATGATGCTGGTGTTCGCATTAACAAAAGTTTCGTATCTTTGGTTAATGATGCCGGTGGATTTGAAAAGATACAATTCCTGGAACGTGACGCCCGCAATTACATTGGCCAACAACGAAGGACTCTTTGTAAGAAAGGAGATGGCCAAGCACTACTAGAAATGGACGACCATAACCGAATATGTAGTGTGTTTTGGGCCGACGCACAAAGTCGTGCAGCTTGTGCAGATTTTGGTGATGTTGTGTCGTTTGACACAACCTACCTAACAAACAAATACGACATGCCTTTTGCACCGTTTGTTGGGGTTAACCATCATGGTCATTCCATATTACTTGGGTGTGCTTTGATTTCAACTGAGGACACTTCAACATTCACATGGCTATTTTCGTCTTGGCTTAGATGTATGTCAAACAAGGCTCCTCAAGGTATCGTCACTAACCAATGCAAGGCAATGTCCAATGCCATTGAAGTTGTCTTTCCAAACACAACATATCGTTGGTGCTTGTGGCACATAATGAAAAAAATACCTGAGAAGATGCAAGCCTACAAACATTATGGTGCAATCAAAAGCGAACTAAAAAGGCTTGTGTATGAGACAGTTACTGATAAAGACTTTGAGTTAGGGTGGGGAAATTTAATTTCATGTCATGGGTTAGCGAACAATGAATGGCTAAATTCATTGTATGCAGATAGATAA 1131 0.4032 MSLEQVTCEVNNDSIDNVNDIVPKLHMWFDTIEEVKTFYTDYVVKCGFGVRIRTSKRSKNNELNFMKLVCCREGKYISPIAPELKTQPSQKTECPAGITVAMKEGRWQVRTVVIEHSHDMCPNNSNLIRGNRRLNMHAKHTLNMNDDAGVRINKSFVSLVNDAGGFEKIQFLERDARNYIGQQRRTLCKKGDGQALLEMDDHNRICSVFWADAQSRAACADFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGHSILLGCALISTEDTSTFTWLFSSWLRCMSNKAPQGIVTNQCKAMSNAIEVVFPNTTYRWCLWHIMKKIPEKMQAYKHYGAIKSELKRLVYETVTDKDFELGWGNLISCHGLANNEWLNSLYADR* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1396 376 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 16 376 IPR031052 GO:0006355
Vra5g1396 376 Pfam MULE transposase domain 225 319 IPR018289 -
Vra5g1396 376 PANTHER OS03G0843700 PROTEIN 16 376 - -
Vra5g1396 376 Pfam FAR1 DNA-binding domain 37 121 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1396 Vra-Chr5 20701783 20702963 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra5g1396 MULE 6.3e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1396 - - var:108341250 533.102