Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1394 ATGACTTCTGTTTCTCTGAACCTACCAGGTCCTACCATACAAGATCAAACTCATCTCTTCATTTCTCCTGATAATCACCAATCAACTCTCTCATGTTACTCCTTCTTCGACATATTAGACCAAAGCCAGGCCAAAGATATCAGATGCTTCAGACATGGTCATCAGGAGGATGTGAAGTTTGTATTCCATGGTCGATCATCAGATAATCAACAAGTGTGCAATGCATCGTCCACTCAACCTAAGTCGGTTATGGCAGATCCAAATAGCGGCGCGAGTGGCCACCTAGCAGAAGAGGAAATAGAGGAGGAAGAGAACAGAAGAGGAAATTACGAGTATGAAAAACTGTTGTCTTCGAATGTGAGCTTGACGAGAAAAATGATGAGGCCACCTAGCAATAATTTAACCACAAAGAAAGCATTCGATATAATTAGGGTTTGTGCAGATTGTAACACAACAAGTACCCCACTCTGGAGGAGTGGTCCTAATGGTCCTAAGTCACTTTGCAATGCCTGCGGCATTCGGCAGAGGAAGGCGAGAAGGGCAATGGCAGAAGCTGCGAATAGTTCCGTAGATTCAAAGTCCAGAGTGCATCATCTGAAGGAAAAGAAGTGTCGTAGAAACCATTTTGCAGGGTTGAAGAATAAGTCCAAGACTGGTAGAGGAACATTATCTGAGGAGCAGAAAGTGAGGATTGATTTGAAGGATTTTTCTATAAGTTTGAGGGATGATTCATCTTTGAAGCAAGAGTTTCCAATGGATGAAGTAGCTCAAGCAGCGATGCTTCTTATGGATTTATCTAGAGGCTTTCTTTACTTATAA 819 0.4237 MTSVSLNLPGPTIQDQTHLFISPDNHQSTLSCYSFFDILDQSQAKDIRCFRHGHQEDVKFVFHGRSSDNQQVCNASSTQPKSVMADPNSGASGHLAEEEIEEEENRRGNYEYEKLLSSNVSLTRKMMRPPSNNLTTKKAFDIIRVCADCNTTSTPLWRSGPNGPKSLCNACGIRQRKARRAMAEAANSSVDSKSRVHHLKEKKCRRNHFAGLKNKSKTGRGTLSEEQKVRIDLKDFSISLRDDSSLKQEFPMDEVAQAAMLLMDLSRGFLYL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1394 272 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 14 270 - -
Vra5g1394 272 SMART GATA_3 140 191 IPR000679 GO:0006355|GO:0043565
Vra5g1394 272 Pfam GATA zinc finger 146 179 IPR000679 GO:0006355|GO:0043565
Vra5g1394 272 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 139 184 - -
Vra5g1394 272 ProSiteProfiles GATA-type zinc finger domain profile. 144 176 IPR000679 GO:0006355|GO:0043565
Vra5g1394 272 CDD ZnF_GATA 145 182 IPR000679 GO:0006355|GO:0043565
Vra5g1394 272 ProSitePatterns GATA-type zinc finger domain. 146 171 IPR000679 GO:0006355|GO:0043565
Vra5g1394 272 MobiDBLite consensus disorder prediction 72 86 - -
Vra5g1394 272 Gene3D - 143 207 IPR013088 GO:0006355|GO:0008270
Vra5g1394 272 MobiDBLite consensus disorder prediction 72 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1394 Vra-Chr5 20694424 20695656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1394 141 271 C2C2-Gata Transcription Factor Family AT5G49300 41.985 1.05e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra5g1394 GATA 4.6e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1394 - - gmx:102659929 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1732 6 33558515 33560594 Vra5g1394 5 20694424 20695656 PCT