Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1393 ATGATTTTTACCGAGGATCTGTGGCCGCTGCTCCACCAACTGGTTGGGAACACTTCTCTCTTTTCAGAGAAACCGTCCTTCTTCCACAACCTTCTGGAATCGATGACCAACTCCACCTGCGCAGGCGATGAGTTCGACCAGTGTCGAGACGAGTCGGCGGCGTTGGTTCTCAAATTCGTCGCCATCGCCTCCATTCTCCTCTCCGGCATGGCCGGAATCGCGATCCCCCTCGTCGGAAAACACCGCCGCTTCCTCCGCACCGACGGCAACCTCTTCGTGGGTGCCAAGGCCTTTGCCGCCGGGGTGATTCTGGCCACGGGATTCGTCCACATGCTCTCTGATGCCACCGAAGCGCTCCAGCACCCGTGCCTGCCTTCCTTCCCGTGGTCCAAGTTCCCCTTCACCGGCTTCTTCGCCATGATGGCCGCGCTCTTCACTCTCCTCCTCGATTTCGTGGGAACGCAATACTACGAGCGCAAGCAGGGGCTCAACCGTCCCTCGGAGGAACAGTCTCGGGTCGGGTCCTCCGAATCCGGAGGGAAGGTGTTTGGAGAAGAAGAGAGTGGGGGAATGCACATCGTGGGGATGCATGCACACGCCGCGCATCATCGACATAACCACCCCCATGGCCATGACTCGTGCCATGGCATTGGCAGCGAGAAGGAACAAGTTAGCGCGCATGCTGACTCCCATGGACACGGTGGTCACGGTCACGGTCACGGTCACCTCCCCGGCCACTCCCACATGGAAGATGTCGAAGAAACCGACGTTCGACACGTCGTGGTTTCTCAGGTGTTGGAGCTTGGGATTGTGTCACATTCGGTTATAATCGGGTTGTCTCTTGGGGTTTCTCAAAGTCCTTGTACCATAAGGCCTCTGATTGCGGCGTTGTCTTTTCATCAGTTTTTTGAAGGGTTTGCGCTTGGAGGGTGCATTTCCCAAGCGCAGTTTAAAGCTTCCTCAGCAACCATAATGGCTTGTTTTTTTGCATTGACTACACCGTTGGGTGTTTCGATCGGAACGGCCATTTCTTCAAGGTTTAACCCTTACAGCCCCGGTGCACTGATCACCGAAGGTATTCTGGATTCCTTGTCGGCGGGGATTTTGGTGTATATGGCTTTGGTAGATTTGATAGCTGCGGATTTTCTTAGCAAGAGAATGAGTTGTAACTTCAGGCTACAGATAGCATCTTACTGCATGCTTTTCCTTGGGGCTGGATTGATGTCTTCGCTCGCTATTTGGGCCTGA 1248 0.5473 MIFTEDLWPLLHQLVGNTSLFSEKPSFFHNLLESMTNSTCAGDEFDQCRDESAALVLKFVAIASILLSGMAGIAIPLVGKHRRFLRTDGNLFVGAKAFAAGVILATGFVHMLSDATEALQHPCLPSFPWSKFPFTGFFAMMAALFTLLLDFVGTQYYERKQGLNRPSEEQSRVGSSESGGKVFGEEESGGMHIVGMHAHAAHHRHNHPHGHDSCHGIGSEKEQVSAHADSHGHGGHGHGHGHLPGHSHMEDVEETDVRHVVVSQVLELGIVSHSVIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKASSATIMACFFALTTPLGVSIGTAISSRFNPYSPGALITEGILDSLSAGILVYMALVDLIAADFLSKRMSCNFRLQIASYCMLFLGAGLMSSLAIWA* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1393 415 MobiDBLite consensus disorder prediction 161 186 - -
Vra5g1393 415 TIGRFAM zip: ZIP zinc/iron transport family 40 415 IPR004698 GO:0005385|GO:0016021|GO:0071577
Vra5g1393 415 Pfam ZIP Zinc transporter 57 412 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vra5g1393 415 MobiDBLite consensus disorder prediction 203 248 - -
Vra5g1393 415 PANTHER ZIP ZINC/IRON TRANSPORT FAMILY PROTEIN 35 415 - -
Vra5g1393 415 PANTHER ZINC/IRON TRANSPORTER 35 415 - -
Vra5g1393 415 MobiDBLite consensus disorder prediction 211 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1393 Vra-Chr5 20678875 20680782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1393 34 415 Inorganic Solute Cotransporters AT1G10970 68.622 1.08e-176 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1393 K14709 - gmx:100812212 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1730 6 33528032 33532639 Vra5g1393 5 20678875 20680782 PCT