Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1390 ATGAGCGCAGAGGACGATGACTCAGAGGGGAAAAGATTGAAACTTCGGCAAGATAAGGTGTTCGATTGTGGTGTGAAGAATTTCCAGCGCGATCTGGTGGCTGGGGCGTTGATGGGCGGTGTGGTGCACACGATTGTTGCCCCAATTGAGAGGTCGAAGCTGTTGCTGCAGACTCAGGAAAGCAATTTGGCCATTGTGGCGAGTGGGCGTCGCAGATTCAAGGGCATGTTTGATTGCATAGCCCGTACTGTCAGGGAAGAGGGCATTCTCTCTTTGTGGCGAGGTAATGGCAGCAGTGTTATTCGTTACTATCCTTCTGTGGCCCTCAACTTTTCTCTCAAGGATCTTTACAAAAGCATTTTAAGGGGTGGAAACTCTAGTGATAATTATCTTTTGACAGGTGCCACTGCAAATTTCGTGGCTGGTGCTGCAGCCGGTTGCACAACACTTGTACTGGTATACCCCCTTGACATAGCACACACGCGCCTTGCTGCAGACATTGGAAGTACTGAAGTGCGCCAATTTCGAGGTATTTTCCATTTCTTGGCTACCATATTCCACAAGAATGGCGTTCGCGGAATCTACAGGGGCCTTCCTGCATCTCTTCAAGGGATGGTGGTACACAGGGGCATATATTTTGGAGGTTTTGATACCATGAAAGAGATATTGTCTGAAAAATCAAAACCTGAGTTGGCATTGTGGAAGCGTTGGGTAGTAGCTCAGGCAGTCACAACCTCTGCAGGGTTGATATCTTATCCGTTAGACACGGTTCGTAGGAGGATGATGATGCAATCTGGCATGGAACAGCCAATGTATGATAGCACCCTTGACTGCTGGAGGAAGATGTACAGGAATGAAGGGCTGGCTTCATTCTACCGTGGTGCAGTTTCTAATATGTTTAGGAGCACAGGAGCAGCTGCTATCTTAGTGTTGTATGATGAGGTTAAGAAATTTATGAACTGGGGAAGTTTCTAA 975 0.4749 MSAEDDDSEGKRLKLRQDKVFDCGVKNFQRDLVAGALMGGVVHTIVAPIERSKLLLQTQESNLAIVASGRRRFKGMFDCIARTVREEGILSLWRGNGSSVIRYYPSVALNFSLKDLYKSILRGGNSSDNYLLTGATANFVAGAAAGCTTLVLVYPLDIAHTRLAADIGSTEVRQFRGIFHFLATIFHKNGVRGIYRGLPASLQGMVVHRGIYFGGFDTMKEILSEKSKPELALWKRWVVAQAVTTSAGLISYPLDTVRRRMMMQSGMEQPMYDSTLDCWRKMYRNEGLASFYRGAVSNMFRSTGAAAILVLYDEVKKFMNWGSF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1390 324 Gene3D Mitochondrial carrier domain 30 321 IPR023395 -
Vra5g1390 324 SUPERFAMILY Mitochondrial carrier 26 314 IPR023395 -
Vra5g1390 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 235 318 IPR018108 -
Vra5g1390 324 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085
Vra5g1390 324 PRINTS Mitochondrial carrier protein signature 44 58 IPR002067 GO:0055085
Vra5g1390 324 PRINTS Mitochondrial carrier protein signature 95 115 IPR002067 GO:0055085
Vra5g1390 324 PRINTS Mitochondrial carrier protein signature 148 166 IPR002067 GO:0055085
Vra5g1390 324 PRINTS Mitochondrial carrier protein signature 195 213 IPR002067 GO:0055085
Vra5g1390 324 PRINTS Mitochondrial carrier protein signature 240 262 IPR002067 GO:0055085
Vra5g1390 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 133 222 IPR018108 -
Vra5g1390 324 Pfam Mitochondrial carrier protein 27 122 IPR018108 -
Vra5g1390 324 Pfam Mitochondrial carrier protein 135 226 IPR018108 -
Vra5g1390 324 Pfam Mitochondrial carrier protein 232 320 IPR018108 -
Vra5g1390 324 PRINTS Adenine nucleotide translocator signature 28 40 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vra5g1390 324 PRINTS Adenine nucleotide translocator signature 73 94 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vra5g1390 324 PRINTS Adenine nucleotide translocator signature 106 118 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vra5g1390 324 PRINTS Adenine nucleotide translocator signature 133 146 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vra5g1390 324 PRINTS Adenine nucleotide translocator signature 236 252 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vra5g1390 324 PANTHER ADP,ATP CARRIER PROTEIN-RELATED 25 323 - -
Vra5g1390 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 120 IPR018108 -
Vra5g1390 324 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 25 323 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1390 Vra-Chr5 20645049 20651802 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1390 26 321 Antiporters AT5G17400 38.816 1.14e-64 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1390 K05863 - gmx:100797251 551.206