Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1388 ATGAAGGGAGGTATAGTGAAAGAGGAAGAAACAATCGCATTTGCAGCTGCTGCTGCTTCTTCACCTTCATCCTCAACATCCAACCTCTTCCCGCAACCAAGGGAAGGGTTGCACGATGTGGGTCCACCTCCGTTTCTCACCAAAACCTTCGACGTGGTCGAAGACCCTTCTACTAACGACATCGTTTCCTGGAGCAGAGCACGCAACAGTTTCGTCGTTTGGGACTCTCACAAGTTCTCCACTACCATCTTGCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCGTCCGACAACTCAACACCTATGGTTTTAGAAAAGTTGATCCTGACAAATGGGAATTTGCGAACGAAGGGTTTCTGGCGGGACAGAGGCACTTGTTGAAGACGATCAAGAGAAGGAGGCACGTAACACAGACGCAGTCACATGATGGAGGAAGTGGAGCTTGCGTTGAATTGGGGGAGTTTGGATTGGAAGGTGAGATTGAGAGGTTGAGGAGAGACAGGACAGTTTTGATGGCTGAAATTGTGAAGTTGAGGCAACAACAGCACAATTCAAGGGAGCAATTGTTGTCCATGGAGAGCAGATTGCAAGTCAGCGAGAAGAAACATCAGCAGATGATGACTTTTCTTGCTAAGGCACTCAACAATCAGACTTTTATTCAGCATTTCCTTCACAGGAACGCTCAGAAGATAGAGTTGCAAGGTGCTAGAAGAAAGAGGAGACTGACTGCTTCCCCAAGCGTGGAGAATTTGCAGCAAGATCCGGTGATTGATGCGGCATTACCAGTTGAAGAGGAATCCACTAATATTGAGTCGCATATGGAGTCTCTTCTCTCAGCTGTTTGTGACGATGATCCATTAGAATCGAGCTCTGAATTAGAAGACCCGATTTTAGGTTCAGTTCCTACAACTGGTGGTGGTAGTGATTTGGGGGTGGTAAGTGATGCAATCTGGGAGGACTTACTGAACCAAGACTTGGTTGCTGCGAACCATGAGGAGGAAGTTGTGATTGGTGATTTTTCACAAGTTGATGTTCCTGTGGAGGATTTGGTTGCTGATCCTGATGAGTGGAGTGAGGATTTGCAGAATCTTGTGGATCATATGGGTTATCTTGCGTCCAAACCCTAG 1131 0.4677 MKGGIVKEEETIAFAAAAASSPSSSTSNLFPQPREGLHDVGPPPFLTKTFDVVEDPSTNDIVSWSRARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRHVTQTQSHDGGSGACVELGEFGLEGEIERLRRDRTVLMAEIVKLRQQQHNSREQLLSMESRLQVSEKKHQQMMTFLAKALNNQTFIQHFLHRNAQKIELQGARRKRRLTASPSVENLQQDPVIDAALPVEEESTNIESHMESLLSAVCDDDPLESSSELEDPILGSVPTTGGGSDLGVVSDAIWEDLLNQDLVAANHEEEVVIGDFSQVDVPVEDLVADPDEWSEDLQNLVDHMGYLASKP* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1388 376 MobiDBLite consensus disorder prediction 286 305 - -
Vra5g1388 376 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra5g1388 376 Coils Coil 162 182 - -
Vra5g1388 376 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 13 332 - -
Vra5g1388 376 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Vra5g1388 376 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra5g1388 376 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra5g1388 376 Gene3D - 38 135 IPR036388 -
Vra5g1388 376 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra5g1388 376 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra5g1388 376 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra5g1388 376 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 332 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1388 Vra-Chr5 20627791 20629847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1388 31 376 HSF AT2G26150 51.143 1.99e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra5g1388 HSF_DNA-bind 1.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1388 K09419 - gmx:100794605 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1717 6 33371292 33374442 Vra5g1388 5 20627791 20629847 PCT