Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1387 ATGTTTACCTTGCTGGCTTTAATAACAGGAGGCTTCTTCCTATATCTCTATGCACCTTATTGGGGTGTAAGGAAGGTTCCAGCTCCACCTTCTTTCCCTCTTATAGGACACCTTCCCTTGCTCGCTAAATATGGCCCTGATGTCTTCTCAGTCCTTGCCAAACAATATGGTCCCATTTACAGATTCCATATGGGGAGACAACCACTAATAATTATAGCAAATGCAGAGCTGTGCAAAGAAGCTGGAATTAAGAAATTCAAAGATATTTCTAACAGAAGTATTCCATCACCAATATCTGCTTCTCCTCTTCACCAAAAGGGTCTCTTCTTCAGCAGGGACTCACAATGGTCTACCATGCGAAACACTATACTATCGATCTACCAACCATCACACTTATCCGGATTAGTGCCACTGATGCAGTCTTTCATAGAATCTGCCACTGAAAACCTTGACTCTCAAAAAGAAGACATTGTTTTTTCCAACTTGTCCCTCAGACTTGCAACTGATGTGATTGGGCAGGCAGCATTTGGTGTAAACTTTGGTCTTTCTAGACCCAATTCAGTTTCTGATTCTATCAAGAGTCTTGACACTAATGACAATGAAGTATCGGATTTCATCAACCAGCACATATACTCCACTACACAACTCAAGATGGACCTGTCTGGTTCCTTTTCCATTATATTGGGTCTGCTTTTGCCAATACTTCAAGAGCCGTTTAGGCAAATTCTCAAGAGAATTCCAGGAACCATGGACTGGAAGATTGAGCGTACAAACCAAAAACTAAGTGGCCGTCTTGATGAGATTGTAGAAAAAAGAATGAAAGATAAGACCCCCAGTTCAAAGGATTTCTTGTCACTCATACTTAATGCCAGAGAAACAAAAGCTGTTTCAGAGAATGTATTCACACCAGACTACATCAACGCAGTTACTTACGAGCATCTGCTTGCTGGTTCAGCTACCACCTCCTTTACCTTGTCTTCTGTTATCTATTTGGTTGCTGGACATCCTCAAGTTGAGAATAAATTGCTTCATGAGATAGATGCCTTTGGTCCTGTCGATAAGATTCCTACTTCTCAAGATCTTCGTGACAACTTCCCTTATCTTGATCAGGTGATCAAAGAGGCAATGAGATTTTACACTGTATCTCCATTAGTTGCAAGAGAAACATCAAATGAAGTGGAGATTGGAGGCTATCTTCTCCCAAAGGGTACTTGGGTGTGGTTAGCACTTGGAGTTGTGGCAAAAGATCCCAAGGACTTTCCAGAGCCAGAAAAGTTCAAACCAGAGAGGTTTGACCCCAACTGTGAAGAAATGAAACGAAGGCATCCTTATGCTTTTATACCATTTGGAATTGGTCCTCGGGCATGCATTGGTAAACAATTTTCCCTACAAGAGATCAAGCTTTCTCTCATTCATTTATATCGGAAATACTTGTTTCGGCATTCACCCAATATGGAAAACCCCTTGGAACTCCAGTATGGAATAGTCCTCAACTTCAAGCATGGGGTCAAGCTCAGAGCCATAAAAAGAACCTAA 1536 0.4147 MFTLLALITGGFFLYLYAPYWGVRKVPAPPSFPLIGHLPLLAKYGPDVFSVLAKQYGPIYRFHMGRQPLIIIANAELCKEAGIKKFKDISNRSIPSPISASPLHQKGLFFSRDSQWSTMRNTILSIYQPSHLSGLVPLMQSFIESATENLDSQKEDIVFSNLSLRLATDVIGQAAFGVNFGLSRPNSVSDSIKSLDTNDNEVSDFINQHIYSTTQLKMDLSGSFSIILGLLLPILQEPFRQILKRIPGTMDWKIERTNQKLSGRLDEIVEKRMKDKTPSSKDFLSLILNARETKAVSENVFTPDYINAVTYEHLLAGSATTSFTLSSVIYLVAGHPQVENKLLHEIDAFGPVDKIPTSQDLRDNFPYLDQVIKEAMRFYTVSPLVARETSNEVEIGGYLLPKGTWVWLALGVVAKDPKDFPEPEKFKPERFDPNCEEMKRRHPYAFIPFGIGPRACIGKQFSLQEIKLSLIHLYRKYLFRHSPNMENPLELQYGIVLNFKHGVKLRAIKRT* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1387 511 SUPERFAMILY Cytochrome P450 19 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 PRINTS P450 superfamily signature 370 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 PANTHER CYTOCHROME P450 FAMILY PROTEIN 1 511 - -
Vra5g1387 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Vra5g1387 511 PANTHER THROMBOXANE-A SYNTHASE 1 511 - -
Vra5g1387 511 Pfam Cytochrome P450 27 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 Gene3D Cytochrome P450 12 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 PRINTS E-class P450 group I signature 53 72 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 PRINTS E-class P450 group I signature 166 184 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 PRINTS E-class P450 group I signature 369 387 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g1387 511 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1387 Vra-Chr5 20617048 20622546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1387 64 510 Cytochrome P450 AT2G26170 74.720 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1387 K20771 - gmx:100797803 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1716 6 33357973 33360886 Vra5g1387 5 20617048 20622546 PCT