Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1386 ATGGGTGCATCAGGAAAATGGGTGAAGGCTTTAATCGGACTCAAGAAACCAGACAAGGACGAACATGTGAAAGAGGGTGGTAAGAGCAAGAAGTGGAGGCTATGGAGGAGTTCTTCTGGGGATGTGGGTTCTTGGAAGGCTTTCAAAGGAAACCACCACAAAGCAGCTTCTGAAGGCTCTCATTCTCCACCTGTTGTAGCAGCAGATGCTTACACAGCTGCAGTAGCCACTGTGGTTCGAGCACCTCCTAAGGATTTCAGACTCATCAAGCAAGAATGGGCCGCCATAAGAATCCAAACTGCCTTCCGTGCCTTCTTGGCAAGAAGGGCTTTGAGGGCATTGAAAGGAGTGGTGAGGATTCAAGCTCTTGTTCGGGGGAGACAGGTGAGGAAACAAGCTGCGGTGACACTGAGGTGTATGCAGGCCTTGGTTCGGGTTCAGGCTCGTGTAAGAGCTCGTCGTGTGAGAATGTCCATAGAGGGGCAAGCTGTGCAGAACATGCTTAATGAAAGGCGCAGTAAGCTTGAACTTTTGAAGCAAGCCGAGGAAGGATGGTGTGACAGCAGAGGAACCGTGGAAGATGTTAAAGCAAAGATTCAGATGAGGCAAGAAGGAGCTTTCAAAAGGGAAAGAGCAATTGCTTACTCTCTTGCTCAAAAGCAATCCAGATCAACCTCAAGTTATAATTTACGAACTAGTGGCTCTGTTTCCTCTCTGAAGAACCATGAGATTAACAAAGCTAACTGGGGGTGGACTTGGTTGGAGCGTTGGATGGCAGCCAAGCCTTGGGAGAGTAGATTGATGGAGCAATCTCAGGCTGAAGGCCTGTTAGATAAAACCCCACATCCAAAGAAGTTTGAGGAATCCTTTGTGAACTCTAATTCCAAATCATGTTTGGTCAAAGTCAAGAAGAACAACATGACAACAAGGGTTTCTGCTAGGCCTCCCCTTTTTGGCCAAGCTACTCGTTCATCCTCAAGTCCAAGTTCTGAGTTTCGATATGATGAGAGTTCTGCATCATCGTCCATTTGTACATCTACAACACCAATGTCTGGGAACACTTGTGACAGGACAGATGACAGTAATGGTAATGCTGTAGCTAGGCCTAATTACATGAACCTGACTCAGTCCACAAAGGCAAAGCTAAAGACTAGTAGTAATCATGTGTATAATAGAGCTCAAAGGCAACAGTCCATGGATGATTTTCAATTTCTCAAGAGGGCAGCGGTTCTCTCCAATGGAGATTCCAAAAGCACTGCAGGTTCTGACCCTTCAATCAACCTTTCTAGGCCACTTCACTTGGACAAGGGCTCGATGAGGCCACGGTGA 1329 0.4695 MGASGKWVKALIGLKKPDKDEHVKEGGKSKKWRLWRSSSGDVGSWKAFKGNHHKAASEGSHSPPVVAADAYTAAVATVVRAPPKDFRLIKQEWAAIRIQTAFRAFLARRALRALKGVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQNMLNERRSKLELLKQAEEGWCDSRGTVEDVKAKIQMRQEGAFKRERAIAYSLAQKQSRSTSSYNLRTSGSVSSLKNHEINKANWGWTWLERWMAAKPWESRLMEQSQAEGLLDKTPHPKKFEESFVNSNSKSCLVKVKKNNMTTRVSARPPLFGQATRSSSSPSSEFRYDESSASSSICTSTTPMSGNTCDRTDDSNGNAVARPNYMNLTQSTKAKLKTSSNHVYNRAQRQQSMDDFQFLKRAAVLSNGDSKSTAGSDPSINLSRPLHLDKGSMRPR* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1386 442 PANTHER IQ-DOMAIN 5-RELATED 1 440 - -
Vra5g1386 442 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Vra5g1386 442 MobiDBLite consensus disorder prediction 314 368 - -
Vra5g1386 442 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 440 - -
Vra5g1386 442 Pfam IQ calmodulin-binding motif 115 132 IPR000048 GO:0005515
Vra5g1386 442 Pfam IQ calmodulin-binding motif 93 112 IPR000048 GO:0005515
Vra5g1386 442 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
Vra5g1386 442 MobiDBLite consensus disorder prediction 412 442 - -
Vra5g1386 442 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1386 Vra-Chr5 20614561 20616989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1386 1 442 IQD Protein Family AT2G26180 58.691 1.03e-148 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1386 - - gmx:100799714 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1386 5 20614561 20616989 Vra5g1386 5 20614561 20616989 ECH
Vra6g1715 6 33354884 33357829 Vra5g1386 5 20614561 20616989 PCT