Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1379 ATGTCTCTTCAATACTCAGGTGCCGCCCCGCCGCAGAACGTCACAATGGTAGCCGTCGACAAAGACAAGAACAGTGTCCACGCTTTCCGTTGGGCCGTTAATCATCTTGACAACCCCGTCATCATTGCCGTCCATGTCAAGCACAAAAACTTTTCTCATCGTAGCTACCCTCTTATTCACGCATATCATATCATATATACACTATTGCATGCAGATGTCACCAATGTGTTTCCACCCGACGAAGACGATGTACTCAATATTTTCAATTCCTTACGCGGAATCTGTACTCGCAAAGCTGTCACGATGAAAGAAGCCGTAATTGATGATGCCGATGTTGTGAGAGGACTTCTAGAGTTTGCTAACAGGAATCTCATACATAGTATCGTGGTCGGTGCATCTACCAAAAACCCTTTGTCAAGTCTCAAAAAACTTAAAGCCTATCAGTATCAGGATGTACCAACAGCCATGATCAAATCAGCTCCGGATTTCTGCTCTGTTTACATAATTTCGAAATTGAAGATTCTGTCTGCTCGATCAGCGGTACGGTCATTGTCAAAAAATTTAACTACACCGAAACTAATTCCTGTGCCGCCAAGTCCTCCCAGTCCAGATGGACCATTAAGGGGACAACTACCAAGAAGTAGGGGCACTTACGAAGTTGCAGCAGAACCAATGAGAATAATACATGCTAGAGAAAGGCCAAAGAGTACGGGAAATGTTATATCAATAGACCACATTGAAATACCCGCTCGTCCACGAAATTGGTCAATGGATGAAAAAGAAATTTCATGGCTTGGGGATATCAATAGAATTGACTCTGGTATATCAGAATCCATCCCCGTGTCATATTCTCCTCAATCCTCAAAAGAAATAGAAGCCGAGATGAGAAGATTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCAGCCAAAAACCAGGCGGAACAGATTCGTCAATGGAAACTGGAAGAGGATCGCAAGGTTGAGGTAGTCAGGATGTCTCAAGAGGCCGCTCTTGCAATTGCAGAAAAGGAGAAGGCTATAGCCATAGCTGCAATGGAAGCAGCTGAGGAGGCTAGGAGGAGGGCTGAACAGGAAGCACAGAGAAGAAAGGATGCAGAGGAGAAGGCCAGGGCAGAGGCAGAAGAGAAAGAACGAGCAATATCTACGTTGATTCAAAATGATACCCGGTATAGAAGATACACCATAGAGGAGATTGAAATGGCCACAGAAAAGTTCTCCCCGTCAAACAAAATTGGTGAAGGTGGATACGGACCTGTTTATAAAGGCCACCTTGATCACACCCCCGTTGCAATCAAAATTTTAAGGCCTGATGCCGCTCAGGGCATGAAGCAGTTCAACCAAGAGATTGAGGTACTAAGCTGCATTAGACATCCGCATATGGTCCTCCTCCTTGGTGCATGTCCGGAGCATGGATGCTTAGTGTATGAATATCTGGATAACGGTAGCTTAGAAGACAGATTGTTCCGGAAAAACAACAGCAGACCAATTCCATGGAATAAACGGTTCGAAATATCTGCTGAGATAGCAACTGCACTCCTTTTCCTCCACCAAAACAAGCCAGAACCCATCGTGCACAGAGACCTCAAACCATCTAACATTCTCGTGGACAGGAATTACGTGAGTAAAATCAGTGATGTTGGTCTTGCACGTTTAGTCCCTCCTTCAGTAGCTGATACTGTGACACAATCTTACATGACTTCGGCTGCTGGAACCTTTTGTTACATTGATCCCGAGTATCAACAAACGGGGATTCTAACACCAAAGTCAGATATATATTCTCTGGGGATAATGTTACTTCAGATAATCACAGCCAAGCCTCCCATGGGCCTTGCTCACCTAGTTAGGAAGGCAGTTGAAAAGGGAAGGTTTGAAGAAGTGCTGGACCCTGCGATCACAGATTGGCCGGTGGAAGAGGCTCTATCATATGCCAAATTAGCATTGCAGTGTGCCCAACTCAGCAAGAAGGACAGACCAATTCTTGCAACGGAGATTTTGCCTGAGCTTAGCAGGTTAAGCAGACTTGAATTGCCTCCTCAGAATGATCAATTTTCTTTAAGCAGTGATGATAATCTATAG 2127 0.4476 MSLQYSGAAPPQNVTMVAVDKDKNSVHAFRWAVNHLDNPVIIAVHVKHKNFSHRSYPLIHAYHIIYTLLHADVTNVFPPDEDDVLNIFNSLRGICTRKAVTMKEAVIDDADVVRGLLEFANRNLIHSIVVGASTKNPLSSLKKLKAYQYQDVPTAMIKSAPDFCSVYIISKLKILSARSAVRSLSKNLTTPKLIPVPPSPPSPDGPLRGQLPRSRGTYEVAAEPMRIIHARERPKSTGNVISIDHIEIPARPRNWSMDEKEISWLGDINRIDSGISESIPVSYSPQSSKEIEAEMRRLRLELKQTMDMYSSACKQAISAKNQAEQIRQWKLEEDRKVEVVRMSQEAALAIAEKEKAIAIAAMEAAEEARRRAEQEAQRRKDAEEKARAEAEEKERAISTLIQNDTRYRRYTIEEIEMATEKFSPSNKIGEGGYGPVYKGHLDHTPVAIKILRPDAAQGMKQFNQEIEVLSCIRHPHMVLLLGACPEHGCLVYEYLDNGSLEDRLFRKNNSRPIPWNKRFEISAEIATALLFLHQNKPEPIVHRDLKPSNILVDRNYVSKISDVGLARLVPPSVADTVTQSYMTSAAGTFCYIDPEYQQTGILTPKSDIYSLGIMLLQIITAKPPMGLAHLVRKAVEKGRFEEVLDPAITDWPVEEALSYAKLALQCAQLSKKDRPILATEILPELSRLSRLELPPQNDQFSLSSDDNL* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1379 708 Coils Coil 348 403 - -
Vra5g1379 708 Gene3D Transferase(Phosphotransferase) domain 1 495 701 - -
Vra5g1379 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Vra5g1379 708 ProSiteProfiles Protein kinase domain profile. 422 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1379 708 MobiDBLite consensus disorder prediction 370 391 - -
Vra5g1379 708 CDD STK_N 14 171 - -
Vra5g1379 708 Coils Coil 288 308 - -
Vra5g1379 708 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 141 - -
Vra5g1379 708 Gene3D Phosphorylase Kinase; domain 1 391 494 - -
Vra5g1379 708 Gene3D HUPs 9 169 IPR014729 -
Vra5g1379 708 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 14 694 - -
Vra5g1379 708 SMART serkin_6 422 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1379 708 PANTHER OS02G0152300 PROTEIN 14 694 - -
Vra5g1379 708 Pfam Protein kinase domain 425 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1379 708 SUPERFAMILY Protein kinase-like (PK-like) 402 682 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1379 Vra-Chr5 20549719 20553347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1379 102 691 Receptor kinase-like Gene Family AT5G12000 57.353 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra5g1379 Pkinase 3.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1379 - - gmx:100798861 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1379 5 20549719 20553347 Vra5g1379 5 20549719 20553347 ECH