Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1375 ATGGAGGAGATGTCAACCACGGTTGCAGTGCCATTTAGAGTAGGTAATTCAGTGTGTGATAAGCCAACCATTACTACCCACATGGATGTGTCCAGAATTAAGCTGATGACAGATGCAGGGTTGTTATCCAATTCTATAACTAAGGTTTCTACTGATAATACTTTTATTGCTGATGAGGATCTGGACAGTAATTGTCTTGGGAAGGAAGTTGGTAGTGCAGCAGTCACACCTCCAGAAAAGGGAAGAGTAGAAGAAATTCCGATGTTGGGTATGGTGTCCCAAAACATAAACTCTTTGGTTGTCGGTGAAGAAGTTTTAACCCCAGAAATTGAGGATGATGATTTGATATCGCTAGAAGGTGATTCAATTATTGATAGTTCTCTTTCAGTAGCGAATAGTAGTTTTTGTGGGGATGAGTTCATCGGTTCTGAGATTTCTGCAGATTTAGGGACAAGAAGTTCCATAGAAATAGAGAAAAGCATCAACACTGTGAAAACTGCTGCCAGGGCTACTGATTTGAGTGTGTCAAATGTAGTTGCAGATGTAGCAGTTAGCGTTGAAGAAGAGACAGGAGTTATATCTGGCCCAGAGCCTACTACAGGTGTTATTCATCAACTAACTCTAGAAAGATCTGTGAGTGGAACAGTTGGTAGAAGTGTTTTTGAATTAGATTGTACCCCACTTTGGGGATTTACATCTGTCTGTGGAAAAAGACCTGAGATGGAAGATGCACTTGCAACTGTACCTAGATTTTTGAAAATTCCTATTCAAATGCTAACCGGTGATAGGGTACCTGATGGCATAGACCACTGTTTCAGGGAGCAGACAATACATTTCTTTGGAGTCTATGATGGCCATGGTGGTTCTCAGGTGGCAAATTATTGCCGCGAGCGCATGCATTTAGCCTTGGCAGAGGAAATAGAATCTGTCAGAGAAGGTCTTGTAGTTGAAAGCACCAAGGATGATTGTCGAGATCTGTGGAAAAAAGCCTTCACCGGTTGCTTTTTGAAGGTTGATTCTGAAGTTGGGGGGGATGTTAATACTGATCCTGTTGCCCCAGAAACTGTTGGATCAACTGCTGTTGTTGCTGTTATATGTTCATCTCATATTGTAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTGTGTCGTGGCAAAGAACCCATGGCCCTATCAGTTGACCATAAACCAAATCGACCCGATGAATATGCAAGAATTGAGGCAGCTGGAGGCAGGGTGATACAATGGAATGGTCACCGAGTTTTCGGTGTTCTCGCAATGTCAAGGTCAATTGGTGATAGGTATTTGAAGCCATGGATTATTCCAGACCCTGAGGTGATGTTTGTTCCTCGTGCCAAAGACGATGACTGCCTCATTCTGGCCAGTGACGGCCTGTGGGATGTCATGACAAACGAAGAGGTGTGCGACATTGCTCGGCGGCGCATACTTCTCTGGCACAAGAAAAATGGGCTGCCACTGCCCTCAGAACGGGGAGAAGGAATTGATCCTGCGGCACAAGCAGCTGCAGAGTACCTCTCAAATCGCGCCCTTCAGAAAGGAAGCAAAGACAACATCTCTGTGATTGTGGTGGATTTGAAAGCTCATAGAAAATTTAAGAGCAAGACGTGA 1629 0.4401 MEEMSTTVAVPFRVGNSVCDKPTITTHMDVSRIKLMTDAGLLSNSITKVSTDNTFIADEDLDSNCLGKEVGSAAVTPPEKGRVEEIPMLGMVSQNINSLVVGEEVLTPEIEDDDLISLEGDSIIDSSLSVANSSFCGDEFIGSEISADLGTRSSIEIEKSINTVKTAARATDLSVSNVVADVAVSVEEETGVISGPEPTTGVIHQLTLERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDHCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLVVESTKDDCRDLWKKAFTGCFLKVDSEVGGDVNTDPVAPETVGSTAVVAVICSSHIVVSNCGDSRAVLCRGKEPMALSVDHKPNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAHRKFKSKT* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1375 542 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 113 542 - -
Vra5g1375 542 SMART PP2C_4 218 530 IPR001932 -
Vra5g1375 542 CDD PP2Cc 230 532 IPR001932 -
Vra5g1375 542 PANTHER ALPHABET, ISOFORM E-RELATED 113 542 - -
Vra5g1375 542 ProSiteProfiles PPM-type phosphatase domain profile. 228 532 IPR001932 -
Vra5g1375 542 SUPERFAMILY PP2C-like 224 533 IPR036457 -
Vra5g1375 542 Pfam Protein phosphatase 2C 268 525 IPR001932 -
Vra5g1375 542 Gene3D - 215 542 IPR036457 -
Vra5g1375 542 ProSitePatterns PPM-type phosphatase domain signature. 279 287 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1375 Vra-Chr5 20525951 20530065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1375 1 542 PP2C-type Phosphatase Gene Family AT1G17550 48.556 2.52e-160 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1375 K14497 - gmx:102662702 907.901