Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1374 ATGGAGGATCTCGAGGAGGAAGAGAACGTAGCGGAGGAGGTGTTGGGGTCAAGCTTGACCATGGAGAAGGTGGCGGCGGCGAAGAAGTTTATTGAGAATCATTATAGGGCTCAGATGAAGAACATCCAAGAGAGGAAGGAGAGGCGTTGGGTGTTAGAAAGAAAACTAGCATCTTCGGATGTGCCAAATGAGGAGCGGATCAACCTTATCAAAGATTTAGAGAGGAAGGAGACTGAATATATGCGATTGAAAAGGCACAAGATTTGTGTTGATGATTTTGAACTTTTGACCATCATTGGAAGGGGAGCTTTTGGGGAGGTCAGACTGTGTCGGGAGAAGAAATCTGGAAATATTTATGCTATGAAAAAGCTGAAGAAATCTGAAATGCTTAGGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTGCTGGCTGAAGTTGCCAGTCATTGCATTGTGAAGCTTTACTACTCATTTCAGGATGCTGAGTACTTGTACTTGATTATGGAGTATCTGCCTGGCGGTGACGTTATGACTCTGCTGATGAGGGAAGACACCTTAAGCGAAAATGTTGCTAGATTTTACATTGCACAAAGTGTTCTGGCCATAGAATCTATTCACAAACACAATTACATTCACAGAGATATTAAACCTGATAACCTACTTCTGGATAAAAATGGTCACATGAAGCTCTCTGATTTTGGTCTCTGTAAGCCTCTCGACTGTATTGCCTTGTCTACACTGCATGAAAATCAGACGATGGATGATGAGACTTTGGCAGAGCCAATGGATGTTGATGGATGTTTGCGTGATGCGGACAATCGAAGCAGCTGGAGAAGTCCTCGTGAACAGCTTCAGCATTGGCAGATGAACAGGAGGAAGTTGGCATTTTCAACGGTGGGGACACCGGACTACATTGCTCCTGAAGTACTTCTGAAAAAAGGCTATGGGATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTATGAAATGCTGGTTGGTTACCCTCCATTTTACTCCGATGACCCAATAACCACTTGCAGAAAGATTGTTCACTGGAGAAATCATTTAAGATTTCCTGAAGATACCCAGTTAACACTTGAGGCCAAGGATCTAATTTATAGGTTGCTGTGTGATGTTGATCATAGGTTAGGTACTCGAGGGGCCCAAGAAATAAAGGCTCATCCTTGGTTCCATGGTGTGGAGTGGGAGAAACTCTATGAAATGGAGGCAGCATTTAAACCTCAAGTCAACGGGGAGCTGGATACCCAAAACTTCATGAAGTTTGATGAGGTGGATCCACCAACAGCGGCAAGAAGTGGGTCTGGATCCTCACGAAAGATGCTAACTACCAAAGATCTAAGCTTCGTTGGTTACACTTACAAGAACTTCGATGCTGTAAAAGAAGGGCTTCGTCAATCTTTTGGTGATTCCATGCAAGAGTATGCTTCTAAACGGGCAGCTGAAGAAACAAGTTTACAAATGCTTGCGTCTTCTGGAGATCACATGTTACCATAA 1524 0.439 MEDLEEEENVAEEVLGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWVLERKLASSDVPNEERINLIKDLERKETEYMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLRRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDVMTLLMREDTLSENVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCIALSTLHENQTMDDETLAEPMDVDGCLRDADNRSSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLRFPEDTQLTLEAKDLIYRLLCDVDHRLGTRGAQEIKAHPWFHGVEWEKLYEMEAAFKPQVNGELDTQNFMKFDEVDPPTAARSGSGSSRKMLTTKDLSFVGYTYKNFDAVKEGLRQSFGDSMQEYASKRAAEETSLQMLASSGDHMLP* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1374 507 ProSiteProfiles Protein kinase domain profile. 93 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1374 507 ProSiteProfiles AGC-kinase C-terminal domain profile. 401 473 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra5g1374 507 SMART serkin_6 93 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1374 507 Gene3D Phosphorylase Kinase; domain 1 64 176 - -
Vra5g1374 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Vra5g1374 507 Gene3D Transferase(Phosphotransferase) domain 1 177 242 - -
Vra5g1374 507 Pfam Protein kinase C terminal domain 419 463 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vra5g1374 507 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Vra5g1374 507 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 488 - -
Vra5g1374 507 Pfam Protein kinase domain 292 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1374 507 Pfam Protein kinase domain 94 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1374 507 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 488 - -
Vra5g1374 507 Gene3D Phosphorylase Kinase; domain 1 419 429 - -
Vra5g1374 507 CDD STKc_NDR_like 91 464 - -
Vra5g1374 507 Gene3D Transferase(Phosphotransferase) domain 1 295 418 - -
Vra5g1374 507 SUPERFAMILY Protein kinase-like (PK-like) 76 450 IPR011009 -
Vra5g1374 507 SMART pkinase_C_6 401 465 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1374 Vra-Chr5 20509334 20521442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1374 1 506 AGC Kinase Gene Family AT4G33080 80.392 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vra5g1374 Pkinase 8.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1374 K08790 - gmx:100815717 982.63