Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1370 ATGTGCGCCGTAGTCCATTCTTTTCGTATCAATGGTGTCAAAATGAGTGGTGATAATCCAAAAGCACCAGATTCACCTGAGAATGATTTCACCAAGCAATGGCCTTCGGAGCTCTCCGAGTACCTGAATTTAGATGATGATCCATGGTCATACGATGACCTCGAGTCATTTGTTTCAGGGCATGCTTTCAGCCATAAGACTGAAGCCAATGAAGTTGGCGAGCTTGGAGGAAGTAGCACCCACCATGAAGAGTTTTCAATCAGAGACGATGGTATTAATGAACACGAGAAGAAGGAAGTGAGAGATAGAGTTGCGTTCAAAACAAAGTCAGAGATAGAAATAATGGATGACGGGTTCAAGTGGAGGAAGTACGGAAAGAAGATGGTGAAAAACAGCCCAAATCCAAGGAACTACTATAGGTGTTCAGTGGAAGGATGTTCAGTGAAGAAGGTAGTTGAAAGGGACAAGGATGATCCGAGGTATGTAATAACAACCTACGTAGGCACCCATACTCATCCGAGTTACAGTTAA 531 0.435 MCAVVHSFRINGVKMSGDNPKAPDSPENDFTKQWPSELSEYLNLDDDPWSYDDLESFVSGHAFSHKTEANEVGELGGSSTHHEEFSIRDDGINEHEKKEVRDRVAFKTKSEIEIMDDGFKWRKYGKKMVKNSPNPRNYYRCSVEGCSVKKVVERDKDDPRYVITTYVGTHTHPSYS* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1370 176 SUPERFAMILY WRKY DNA-binding domain 108 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g1370 176 Gene3D WRKY domain 102 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g1370 176 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 25 174 IPR044810 GO:0003700
Vra5g1370 176 MobiDBLite consensus disorder prediction 13 32 - -
Vra5g1370 176 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 25 174 - -
Vra5g1370 176 MobiDBLite consensus disorder prediction 72 94 - -
Vra5g1370 176 SMART WRKY_cls 115 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1370 176 MobiDBLite consensus disorder prediction 77 94 - -
Vra5g1370 176 Pfam WRKY DNA -binding domain 116 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1370 176 ProSiteProfiles WRKY domain profile. 110 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1370 Vra-Chr5 20480468 20481561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1370 40 174 WRKY Transcription Factor Family AT5G26170 54.967 8.30e-42 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra5g1370 WRKY 2.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1370 - - gmx:100808823 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1370 5 20480468 20481561 Vra5g1370 5 20480468 20481561 ECH