Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1366 ATGAGTTTGGGCACCGCCGAGGACGATTCGGGTTCTGAAATCCACATCCCGGCGGAGATTGACTGGCATATGTTGGATAAGTCCAAGTTTTTCTTCCTGGGTGCCGCCTTATTCTCTGGTGTTTCTTTCACGCTCTACCCCATGGTCGTGTTGAAGACGCGCCAACAGGTTTCCTCCTCACGCTTCTCCTGCTTCAACATGTCCTGCGCCATTATGCGTTACGAGGGTCTCAGAGGCTTCTACAAAGGCTTCGGCACTTCCCTCATGGGAACCATCCCTGCGCGTGCGCTCTACATGTGGTCTCTTGAAGTCACTAAAAGTAACGTCGGAACTGCTTTTCTGGAATTGGGGTTCTCTGAGACGACGGCTGTGGCGGTGGCTAATGCTGCGGCGGGTGTTACTTCTGCCATGGCGGCGCAGCTGGTGTGGACACCGGTTGATGTCGTTAGTCAACGGCTCATGGTTCAGGGGAGTGGAGGGAGTAAAACCATTCTGGCGAATCTTAATTCGGAGAGTTACAGGAATGGGTTTGACGCGTTCAGGAAGATTCTGTGTGCTGATGGAGCAAGAGGGTTCTACAGAGGGTTTGGGATTTCGATATTGACTTACGCTCCTTCCAATGCGGTTTGGTGGACTTCTTATTCCATGGTTCACAGACTCATCTGGAGTGCTTTTGGTTCTTACTTGAGTAAGGGTAAAAGTGAAAGCAACGATAATTTGAGTGGTGTTAGGCCTAATTCGAAGACAATGGTGGCGGTTCAAGGGCTGAGTGCGGTTATGGCCAGTGGGGTCTCTGCAATTGTGACAATGCCTCTGGATACCATCAAGACAAGATTGCAGGTGTTGGACAACGAAGAGCATGGGAGAAGGAGACCATTAACTTTTGTTCAGACGGTGAGGAATTTGGTGAAGGAAGGTGGATTGCCCGCATGTTACAGAGGATTGGGACCAAGATGGGCTTCCATGTCATTGTCTGCTACAACTATGATTACTACCTACGAGTTTTTGAAAAGAATGTCTACCAAGAGTCAATAG 1035 0.4966 MSLGTAEDDSGSEIHIPAEIDWHMLDKSKFFFLGAALFSGVSFTLYPMVVLKTRQQVSSSRFSCFNMSCAIMRYEGLRGFYKGFGTSLMGTIPARALYMWSLEVTKSNVGTAFLELGFSETTAVAVANAAAGVTSAMAAQLVWTPVDVVSQRLMVQGSGGSKTILANLNSESYRNGFDAFRKILCADGARGFYRGFGISILTYAPSNAVWWTSYSMVHRLIWSAFGSYLSKGKSESNDNLSGVRPNSKTMVAVQGLSAVMASGVSAIVTMPLDTIKTRLQVLDNEEHGRRRPLTFVQTVRNLVKEGGLPACYRGLGPRWASMSLSATTMITTYEFLKRMSTKSQ* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1366 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 339 IPR018108 -
Vra5g1366 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Vra5g1366 344 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 344 - -
Vra5g1366 344 Gene3D Mitochondrial carrier domain 28 344 IPR023395 -
Vra5g1366 344 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 220 IPR018108 -
Vra5g1366 344 Pfam Mitochondrial carrier protein 126 222 IPR018108 -
Vra5g1366 344 Pfam Mitochondrial carrier protein 251 343 IPR018108 -
Vra5g1366 344 Pfam Mitochondrial carrier protein 36 108 IPR018108 -
Vra5g1366 344 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Vra5g1366 344 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Vra5g1366 344 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 344 - -
Vra5g1366 344 SUPERFAMILY Mitochondrial carrier 23 336 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1366 Vra-Chr5 20458163 20460048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1366 1 344 Chloroplast and Mitochondria Gene Families AT1G72820 66.282 5.76e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1366 K15121 - gmx:100784202 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1366 5 20458163 20460048 Vra5g1366 5 20458163 20460048 ECH
Vra5g1366 5 20458163 20460048 Vra6g1696 6 33020993 33022754 ECH