Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1365 ATGGACGCAGCCGGAGGACCTCCCTACAATCCCCGTTCCGTCAACGAGGTTTTCCGAGATTTCAAGGGCCGCAGAGCCGCCATTGTTAAGGCCCTCACCACCGAGGTTGAATTGTTCTACCAGCAGTGTGATCCAGATAAGGAAAATCTTTGCCTTTATGGATTTCCTAACGAGCACTGGGAAGTCAATCTACCTGCTGAGGAGGTTCCTCCAGAGCTTCCAGAACCAGCATTAGGTATTAACTTTGCCAGAGACGGGATGGAAGAAAAGGACTGGCTATCCTTGGTTGCCGTGCACAGTGATACATGGTTAATTTCTGTGGCTATGTATTTTGGTGCAAGATTTGGATTTGATAAGGCTGATAGGAAGAGTCTTTTTAGTATGATAAATGATCTTCCAACAATATTTGAGGTTGTTGCTGGGAAGGCCAAGAAACAAGGAAAGGAGAAGTCATCAGTCTCTAATCATGACAATAACAAATCTAAATCAAACTCTAAGAGAGGTTATGAATCACAAGAAAAGCATTCAAAATCAATGGAACCAAAGGATGAGAGTGCTTTGGGAAAGGATGATGATCATGGAGATGGACTATGCGGGGCATGTGGAGAGAACTATGCTCATGTTGCTGACGCTGACGAGTTCTGGATTGGCTGTGACATTTGTGAGAGGTGGTATCATGGGAAATGTGTGAGGATTACTCCTGCGAAGGCTCAGAATATCAAGGAGTACAAATGTCCATCTTGCAGCAACAAGAGAGTTCGTCAATAG 768 0.4466 MDAAGGPPYNPRSVNEVFRDFKGRRAAIVKALTTEVELFYQQCDPDKENLCLYGFPNEHWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDTWLISVAMYFGARFGFDKADRKSLFSMINDLPTIFEVVAGKAKKQGKEKSSVSNHDNNKSKSNSKRGYESQEKHSKSMEPKDESALGKDDDHGDGLCGACGENYAHVADADEFWIGCDICERWYHGKCVRITPAKAQNIKEYKCPSCSNKRVRQ* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1365 255 MobiDBLite consensus disorder prediction 146 190 - -
Vra5g1365 255 ProSitePatterns Zinc finger PHD-type signature. 198 248 IPR019786 -
Vra5g1365 255 Pfam Alfin 14 140 IPR021998 GO:0006355|GO:0042393
Vra5g1365 255 ProSiteProfiles Zinc finger PHD-type profile. 195 251 IPR019787 -
Vra5g1365 255 PANTHER CPG BINDING PROTEIN 7 254 IPR045104 GO:0006355|GO:0042393
Vra5g1365 255 Pfam PHD-finger 198 251 IPR019787 -
Vra5g1365 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Vra5g1365 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 250 IPR013083 -
Vra5g1365 255 SMART PHD_3 197 249 IPR001965 -
Vra5g1365 255 CDD PHD_AL_plant 197 251 IPR044104 -
Vra5g1365 255 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 7 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1365 Vra-Chr5 20450667 20453676 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1365 4 254 Alfin-like Transcription Factor Family AT3G42790 68.110 7.25e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vra5g1365 Alfin 2.6e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1365 - - vvi:100247536 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1365 5 20450667 20453676 Vra5g1365 5 20450667 20453676 ECH
Vra5g1365 5 20450667 20453676 Vra6g1697 6 33030718 33034361 ECH