Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1364 ATGGAGGCAGCCGGAGGAGCTCCGTCGAACCCTTCCGTCGACGAAGTCTTCCTAGATTTCAGGGGCCGCAGAGCTGCCATTGTTAAGGCTCTCACTATTGATTACGAAGACTTCTTTCAGCAATGTGATCCAGGTAAGGATGATCTTTGCCTTTATGGATTTCCTAACGAAGTTTGGCAAGTCGATCTACCTGCTGAGGAGGTGCCTGCAGAGATCCCAGAGCCAGTATTAGGTATTAACTTTGCCAGAGACGGGATGGCAGAACGGGACTGGGTATGCTTTGTTGCTGCACACAGTGATACATGGCTAATATCTGTAGCTATGTTTTTTGGTGCAAGATTTGGGTTTGATAAGACTGATAGGGATCGTCTTTTTGATATGATGAATGATCTTCCAACAATATTCGAGGCTGTTGTTGGCAAGGTCAAGAAACAAGGAAAGAAAAAGTCACCAGTTTCTAATCATAACAACAACAAATCTAAATCAAACTCCAAGAAGGGTTCTGAATCTCAAGGAAATTATTCAAAAGCAATGGAATCAAAGGAAGAGGATTATTTGGAAGAGGAGGAAGAAGAACAGGGAGAGACACTTTGTGGGGCATGTGGAGAGAACGATGATGCTGCTGGGTTCTGGATTTGCTGTGACATTTGTCAAAGGTGGTTTCATGGGAGATGTGTGAAGATTACTCGTGCTAAGGCTGACTATATCAAGCAATACAAATGCCCATCTTGTAGCAACAAGAAGCTCGTTAATTGTAGTTTCTAG 765 0.4353 MEAAGGAPSNPSVDEVFLDFRGRRAAIVKALTIDYEDFFQQCDPGKDDLCLYGFPNEVWQVDLPAEEVPAEIPEPVLGINFARDGMAERDWVCFVAAHSDTWLISVAMFFGARFGFDKTDRDRLFDMMNDLPTIFEAVVGKVKKQGKKKSPVSNHNNNKSKSNSKKGSESQGNYSKAMESKEEDYLEEEEEEQGETLCGACGENDDAAGFWICCDICQRWFHGRCVKITRAKADYIKQYKCPSCSNKKLVNCSF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1364 254 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 12 248 - -
Vra5g1364 254 Pfam Alfin 13 139 IPR021998 GO:0006355|GO:0042393
Vra5g1364 254 MobiDBLite consensus disorder prediction 145 174 - -
Vra5g1364 254 SMART PHD_3 197 245 IPR001965 -
Vra5g1364 254 MobiDBLite consensus disorder prediction 151 174 - -
Vra5g1364 254 PANTHER CPG BINDING PROTEIN 12 248 IPR045104 GO:0006355|GO:0042393
Vra5g1364 254 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Vra5g1364 254 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Vra5g1364 254 CDD PHD_AL_plant 197 247 IPR044104 -
Vra5g1364 254 Pfam PHD-finger 198 247 IPR019787 -
Vra5g1364 254 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Vra5g1364 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1364 Vra-Chr5 20443338 20446062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1364 4 248 Alfin-like Transcription Factor Family AT3G42790 60.729 2.15e-99 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra5g1364 Alfin 7.8e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1364 - - vra:106761220 452.595