Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1360 ATGAATCTAAGTGAGAGCCTAACTACCCGCAGCAACCTTTCTCGCCAATCATCCAAGTCCAAGAGTGGTGGATGTTGTCGAGGCCTCAGCAGCGTTAGGACCGTCTCATCCACCGCACCAACCTTGCAACACCATCACCTTCAGCAGCTTTACCAAAAATTGGAACTAAAGGTCGCAGGTTTGGAAAAAGAGGTGCAGAGGCAGACAGAACTGCGCGTTATGTACAGGAAAAGAATGGAAAAGACGCAGGATTACTTGAAATACTGTCTCCAAATCGCACAGGAAAATGGAATCTTGGACCTCATTACCCACTCCAACGGTGAAGTCTCGCAATCTTCCCTTTCTTCTTCACATGAACCCACAGCTTCGCACAACCATCCCAATCTGATACCCATCGTTCATCAAGCCAAAATCAATGGATGGTTCATCAACCCCAGTGAGATTCGTCTGGGAGAAAAAATAGGGCAGGGAACCACGGCGGAGATTCACAGAGGGACGTGGCGCGGGTTTGATGTGGCGGTGAAGTGCATGTCAGATTCATTCTTCAGCAAAAACGAAAACGGTGTCGTATTCTTCGCTCAGGAGGTTGAAACCCTCTCGAAACAGCGTCACCGGTTTGTGCTTCACCTCATGGGTGCGTGTCTCGACCCTCCGCATCATGCATGGGTGGTTACCGAGTATCTGAACACCACGCTCAAGGACTGGCTACATGGGCCGGGGAAAAGGCCCAAAAACAGAACAACGCCGCTCCCTCCCTTCAAAGAGAGGGTGATGCGGGCCCTGGAAATAGCCCAAGCCATGCAGTACCTCCACGAACAAAAGCCCAAGGTCATTCATCGTGACTTGAAGCCCAGCAACATCTTCCTGGACGATGCGTTGCATGTGAGAGTGGCGGATTTTGGTCACGCGCGGTTCTTGGACGACGACGAAATGGCCCTCACCGGAGAAACAGGAACATACGTGTATATGGCACCGGAGGTAATCCGGTGCGAGCCCTACGATGAAAAATGCGATGTATACAGTTTTGGGATCATACTCAACGAATTACTTACTGGAAACTACCCTTATATTGAGACACAACTTGGTCCCGCCAAGATTGCTATGGAAGTTGTGGAGGATGAGCTAAGGCCTTTAATTGCATCAAAGGACGATGGTGAGGAAGTGGAAGAATTGATTGAGCTAATATGCCTTTGCTGGAATGCAAGCCCATCCACTCGACCATCATTCGCAACAATTACTCATACCCTCAACTCTTATGTTAAAAGGGTCCTTCTAATTTCAAATTAA 1287 0.4903 MNLSESLTTRSNLSRQSSKSKSGGCCRGLSSVRTVSSTAPTLQHHHLQQLYQKLELKVAGLEKEVQRQTELRVMYRKRMEKTQDYLKYCLQIAQENGILDLITHSNGEVSQSSLSSSHEPTASHNHPNLIPIVHQAKINGWFINPSEIRLGEKIGQGTTAEIHRGTWRGFDVAVKCMSDSFFSKNENGVVFFAQEVETLSKQRHRFVLHLMGACLDPPHHAWVVTEYLNTTLKDWLHGPGKRPKNRTTPLPPFKERVMRALEIAQAMQYLHEQKPKVIHRDLKPSNIFLDDALHVRVADFGHARFLDDDEMALTGETGTYVYMAPEVIRCEPYDEKCDVYSFGIILNELLTGNYPYIETQLGPAKIAMEVVEDELRPLIASKDDGEEVEELIELICLCWNASPSTRPSFATITHTLNSYVKRVLLISN* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1360 428 Coils Coil 44 71 - -
Vra5g1360 428 Pfam Protein kinase domain 150 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1360 428 CDD STKc_MAP3K-like 154 416 - -
Vra5g1360 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Vra5g1360 428 MobiDBLite consensus disorder prediction 1 27 - -
Vra5g1360 428 ProSiteProfiles Protein kinase domain profile. 148 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1360 428 Gene3D Transferase(Phosphotransferase) domain 1 229 424 - -
Vra5g1360 428 SMART serkin_6 148 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1360 428 PANTHER OS09G0443600 PROTEIN 14 423 - -
Vra5g1360 428 SUPERFAMILY Protein kinase-like (PK-like) 114 415 IPR011009 -
Vra5g1360 428 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 14 423 - -
Vra5g1360 428 ProSitePatterns Protein kinases ATP-binding region signature. 154 175 IPR017441 GO:0005524
Vra5g1360 428 Gene3D Phosphorylase Kinase; domain 1 136 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1360 Vra-Chr5 20415620 20417582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1360 129 423 MAP Kinase Kinase Kinase AT4G35780 35.452 2.84e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Vra5g1360 Pkinase 3.6e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1360 5 20415620 20417582 Vra5g1360 5 20415620 20417582 ECH