Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1359 ATGGATGCTAATTTTAAGAAGCAAGGTCTTCAAGGCGGCGAGGTGAGCTTGGCTGAGAAGAAAAGGGAAGTTATGGTGGCAATTCCAAATGAGGGTGGTGGTGAATCTTTGATGCCAAAGCAGCAGAGCAGGGGGAATTCGCCCCACAGAATGTTAAACGACAACGAGTTTTCTGTAAAGTCGCCACCTTTGAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAGATTCCCGTTTCCAGCGCCAATCTCATCCGGAGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAGCCTTACCCTGTTGATGGGACTCTTTTGGAAGAGAATGGTAACTCAACTTTGCAAGAAAATTTGGGTGTTGGTTCACCATATAAAGCATCGCCTATTAACAATAAACCTGGAACTATTAATAGAACAGTCTCCATCCTTTCTGTGATCACTCCCAAGACGCCGTTGATGGCGTCTCCCGGGCCGGCTGGTGGGGAGGATTTCGATGAACTCATTTACAGAAAAGTTGAATTGAGTAAAAGCAAACGTAGTAGAAGAGTGACAGTTAAGGTTTTGTCTGAATGGTTTGTTTTCGTGTGCATTGCAAGTACTTTGGTAGCTAGTTTAACAGTTGGAAAACTTAAAAGAACGGAGATTTGGGGTTTGGGGATTTGGAGATGGTGTGTGCTTGTGATGGTGACCTTTTGTGGAATGTTGGTTACCAGATGGTTCATGCGCATTATTGTTTTCTTGATTGAGACCAACTTTTTGTTGAGGAAAAAGGTGTTGTATTTTGTCCATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGGGGGGTGGACCGATCTGAATTGGCCACAAAGATTTTAAATGGGGTAACATGGACTCTTGCTTCCCTCCTCATTGGAGCATTCCTGTGGTTCATGAAGACATTGTTGCTCAAGATTTTGGCGTCAAATTTTCATGTTAAATCTTTCTTTGATCGAATTCAAGAAACGCTTTTCCACCAGTACATTCTGCAGACTCTCTCTGGGCCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGAAATCCGTCAGTGTTGGTCACTTTAGTTTCAGGAGTACAGATGGTAAGGGTGGAATGAAGAAAGAAACCATTGATATTGCGAAGCTTCACCAGATGAAACAAGAGAAGGTTTCTGCATGGACTATGAAGGTCTTGATAGATGCAATGACAAATTCAAGGCTGTACACAATCTCTAGTGCACTAGATGAAAGTTTTGATGATGGAGAAAATGAACAGACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCAGCCTATTACATTTTCAGGAATGTTGCTCCCCCCGGTTGCACGTACATTGACGAGGATGAACTACGAAGGTTCATGATTAAGGAAGAAGTGAGGATGGTATATCCCCTACTGGCTGAAGCAGAAACGGGGCAGATTACCAGGAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAGGAACGCAAAGCATTGGCACATGCCTTAAGCGACACCAAAACTGCTGTGAGACAACTAAACAAGCTGGTGACAGTAATCCTAATAGTTGTGACAGCAATTGTGTGGCTTCTACTAATGGAGATTGCAACAACGAAAGTACTTGTATTTCTATCTTCCCAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACTTGTAAGAACATATTTGAAGCTATCATCTTCGTGTTTGTGATGCATCCGTTTGATGTTGGTGATCGATGTGTTGTTGATGGGGTTGAGCTATTGGTTGAAGAAATGAACATATTGACAACAGTCTTTTTGAAGCTTAACAATGAAAAAGTGTACTATCCAAATTCTGTCTTGGCTATGAAACCGATTAGCAACTATTACAGAAGCCCAGATATGGGTGACCGTGTAGAGTTCTCCATTGATTTTACAACACCAGCTGAGAAAATTGGGGCACTGAAAGAAAGAGTAAAAAGGTACCTGGAGAGAAACCCACAGTACTGGCACCCTAATCATGGCTTAGTAGTGAAGGACATTGAAGACGTAAACAAGATTAAGATGGGTATATACGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAAACAAGAGAAGAACTGAATTGGTGATGGAAATAAAGAAGATATTTGAAGAACTCAACATCAGATACAACCTTCTTCCACAAGCCATTCATCTCAGACATATGGAGCCAGACCCAAGGGTTACATGA 2316 0.4236 MDANFKKQGLQGGEVSLAEKKREVMVAIPNEGGGESLMPKQQSRGNSPHRMLNDNEFSVKSPPLNCASPEIRFMPSPNKPPKIPVSSANLIRRKSLTRSVYSKPKSRFGEQPYPVDGTLLEENGNSTLQENLGVGSPYKASPINNKPGTINRTVSILSVITPKTPLMASPGPAGGEDFDELIYRKVELSKSKRSRRVTVKVLSEWFVFVCIASTLVASLTVGKLKRTEIWGLGIWRWCVLVMVTFCGMLVTRWFMRIIVFLIETNFLLRKKVLYFVHGLKKCVQFFIWLGLVLLTWVLLINRGVDRSELATKILNGVTWTLASLLIGAFLWFMKTLLLKILASNFHVKSFFDRIQETLFHQYILQTLSGPPLVEEAEKVGKSVSVGHFSFRSTDGKGGMKKETIDIAKLHQMKQEKVSAWTMKVLIDAMTNSRLYTISSALDESFDDGENEQTDKEITNEMEATAAAYYIFRNVAPPGCTYIDEDELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERKALAHALSDTKTAVRQLNKLVTVILIVVTAIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLAMKPISNYYRSPDMGDRVEFSIDFTTPAEKIGALKERVKRYLERNPQYWHPNHGLVVKDIEDVNKIKMGIYVTHTMNFQEFGEKNKRRTELVMEIKKIFEELNIRYNLLPQAIHLRHMEPDPRVT* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1359 771 Gene3D - 605 654 IPR023408 -
Vra5g1359 771 MobiDBLite consensus disorder prediction 36 51 - -
Vra5g1359 771 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 21 762 - -
Vra5g1359 771 SUPERFAMILY Sm-like ribonucleoproteins 595 654 IPR010920 -
Vra5g1359 771 Pfam Mechanosensitive ion channel 545 751 IPR006685 GO:0016020|GO:0055085
Vra5g1359 771 MobiDBLite consensus disorder prediction 29 51 - -
Vra5g1359 771 PIRSF Memb_At2g17000 17 770 IPR016688 -
Vra5g1359 771 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 21 762 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1359 Vra-Chr5 20410503 20414468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1359 60 761 Mechanosensitive Ion Channel Family AT5G12080 59.915 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1359 K22048 - gmx:100803107 1339.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1359 5 20410503 20414468 Vra5g1359 5 20410503 20414468 ECH