Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1354 ATGAACCTGATTGGTGATGTTAAAGGAAAGGTTGCAGTAATGGTGGATGATATGATCGACACTGCTGGGTTTGCTTTCATTTACATGGAAGATGAACGAGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACTGAATTTGGTAGAAAGGGACGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAACCTTCATCTAATTCAAGGCCATCCAAAACTTTGTTTGTTATTAATTNTGATCNAGTTCACGCCAGGACAAAGGATCTGGAGAGACATTTTGACCCTTATGGGAAAATNTTAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTATGAATCACAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACGGTGGAGTATGCCATAAGAGATNATGATGACAGAGATAGAAGGAACGGATACAGTCCTGAAAGAAGAGCTCATGACTCGCCTGATGGGAGATATGGTCGTGGTAGATCGCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCAAATCCATCTTCTCGACCAGAAACAAAAGGAAGCCCCAAGTATGAACGAGCTGAAAGTCCGATAAATNGGAGATATGATAGGTTTGATCTAATTTACTTGTTTTGTTTTCTTAAAATAGTTTTTGGAGCTATTTCGTTATGTTCTGACTTTTTTACTGTTCCTGCANCCGGTCTCCACCACCCNGAGAAAGGTCANGTTCTTGAGGAAAAGCTGTAG 819 0.4164 MNLIGDVKGKVAVMVDDMIDTAGFAFIYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKPSSNSRPSKTLFVINXDXVHARTKDLERHFDPYGKXLNIRIRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDXDDRDRRNGYSPERRAHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPETKGSPKYERAESPINXRYDRFDLIYLFCFLKIVFGAISLCSDFFTVPAXGLHHPEKGXVLEEKL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1354 272 Gene3D - 4 74 IPR012677 -
Vra5g1354 272 Gene3D - 75 205 IPR012677 -
Vra5g1354 272 PANTHER - 17 208 - -
Vra5g1354 272 SUPERFAMILY RNA-binding domain, RBD 22 155 IPR035979 GO:0003676
Vra5g1354 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 147 IPR000504 GO:0003723
Vra5g1354 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 50 IPR000504 GO:0003723
Vra5g1354 272 MobiDBLite consensus disorder prediction 60 84 - -
Vra5g1354 272 SMART rrm1_1 84 150 IPR000504 GO:0003723
Vra5g1354 272 CDD PRTases_typeI 1 23 IPR000836 -
Vra5g1354 272 MobiDBLite consensus disorder prediction 158 179 - -
Vra5g1354 272 SUPERFAMILY PRTase-like 1 23 IPR029057 -
Vra5g1354 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 61 IPR000504 GO:0003723
Vra5g1354 272 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 17 208 - -
Vra5g1354 272 MobiDBLite consensus disorder prediction 158 219 - -
Vra5g1354 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 154 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1354 Vra-Chr5 20387087 20391549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1354 7 175 Eukaryotic Initiation Factors Gene Family AT1G49760 24.581 1.03e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1354 K12893 - gmx:100797778 345.895