Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1344 ATGGCTACTCGTCTCTTCACATTTCCTCTCACCTCGCAACCCAAGCTCTGCTTCAATTACACGCCCAACCATGCTGTCCAATTCATATCTCCGACCAAACGACGTCGCAACCGCCACCGCCATGAAATTTTCCGTCCATCATTCGCTGTATCCAGCTCCTTCCGGACCGAGATTGGATCACCGGAATCAGTTCTTATCGGAGGCCAGAGAGAGAAAAAAGACTCGCCGGTTCTGCTTGACGTCACCGGCATGATGTGCGGTGCGTGCGTCTCCCGAGTCAAAAACATCCTGTCCGCTGACGATCGAGTTGACTCGGTCGTTGTCAACATGCTGACCGAGACCGCCGCCGTTAATCTGCGCCGGATCGAGGAGGAACCGGCGAGCGTCGCGGAGAGCCTCGCACGGAGACTGAGCGACTGCGGATTTCCGACGAAGCGGAGAGCGTCGAGTTCTGGAGTGACGGAAAACGTGAGGAAGTGGAAGGAATTGGTGAAGAAGAAGGAGGAATTGGTCGCCAAGAGTCGAAGCCGCGTCGCGTTAGCTTGGACATTGGTCGCATTGTGCTGCGGGTCGCACGCTTCGCATATCTTTCACTCTTTGGGGATTCACATTGCTCATGGATCGCTTTGGGAGATTCTTCATAGTTCATACGTGAAGGGTGGTTTAGCTTTGGGGGCTCTATTGGGACCAGGACGAGAGTTACTCTTTGATGGCCTAAATGCGTTTAAGAAGGGGTCGCCTAACATGAACTCTCTTGTGGGATTTGGTTCTATAGCCGCATTCATCATTAGTTCCATCCCGCTACTTAACCCCGGCCTAGCATGGGATGCATCCTTCTTTGATGAACCGGTCATGCTTCTTGGATTCGTGCTTCTGGGACGTTCTCTGGAGGAAAAGGCAAGGATACAGGCATCTAGCGATATGAATGAACTACTTTCACTTATATCTACTCAGTCAAGACTTGTGATTACTTCAACTGAAGGTTCACCTTCTACTGACACTGTGCTTTGCTCTGATGCAATTTGTGTTGAAGTCCCAACTGATGATATTCGAGTAGGTGATTCTGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAAGGTTATTTCAGGGAGAAGTGTTGTAGATGAATCCATGCTTACAGGGGAATCACTTCCTGTATTTAAGGAGAAAGGCCTCACAGTTTCAGCAGGAACTATAAATTGGGATGGTCCTTTAAGGATTGAAGCTTCTTCAACTGGTTCCAACACTGTGATATCGAAGATTGTACGCATGGTTGAGGAGGCTCAATCACGTGAAGCACCTGTACAAAGGCTCGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTCTGTCAGCAGCAACATTTGCTTTTTGGTATTTTGTTGGATCACAGATATTTCCTGATGTGTTGCTCAATGATATGGCAGGCCCAGAAGGAGATCCTTTGCTTTTGAGTTTAAAACTATCTGTAGATGTTTTGGTTGTTTCTTGTCCTTGTGCTTTGGGTCTTGCTACGCCCACAGCAATCCTGGTTGGCACCTCACTTGGAGCAAGAAAAGGACTTCTTATTAGGGGAGGGGATGTGCTGGAACGCTTGGCTAGAATAAACTATATTGCTCTAGACAAGACAGGAACCCTGACGAAAGGAAAACCAGTTGTGTCGGCCATAGGCTCTATCCATTATGGAGAGTCTGAAATTCTTCGGATTGCTGCTGCAGTGGAGAAGACTGCATCTCACCCAATAGCGAAGGCTATTATCAATAAAGCTGAGTCATTGGAGTTGATCCTTCCTGTTACAAAGAGACAGTTAGTAGAACCAGGTTTTGGTACATTAGCAGAAGTAGACGGGCATTTGATTGCAGTTGGATCTTTGGAATGGGTTCATGAACGCTTCCAAACAAAAGTAAATCCGTCCGATTTGACAAATCTGGAACATAGTTTGATGAATCATTCATCAAATACAGCTTCTTCTAAGTACTCGAAAACTGTTGTCTACGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCATAGCTGACACTGTGCGTGAAGATGCTGAATCTACTGTGATGAGGCTGAAGCAGAAGGGGATTAAAACGGTACTCTTGTCAGGAGACAGGGAAGAGGCAGTTGCAACAGTAGCAGATACAGTTGGAATTGAAAATGATTTTGTCAAAGCATCTTTGTCTCCACAACAGAAATCTGGGTTTATTTCCTCTCTAACAGCTGCCGGACATCATGTTGCGATGGTAGGTGATGGGATAAATGATGCACCCTCTTTAGCTGTGGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCGGATGCAGCATCTATTATACTTCTAGGGAACAAAATTTCACAAGTTGTCGATGCGCTCGACCTAGCACAGGCAACAATGGCAAAAGTGTACCAAAATTTGTCTTGGGCAGTCGCCTATAATGTTGTTGCCATTCCCATTGCTGCCGGTGTATTACTTCCCCAATTTGACTTCGCTATGACACCGTCACTTTCAGGAGGACTGATGGCCCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTCTGCAGCTTCATGGGTCTCCGATCCCTAGAAAGGGTAGTAACTCTTGA 2652 0.4702 MATRLFTFPLTSQPKLCFNYTPNHAVQFISPTKRRRNRHRHEIFRPSFAVSSSFRTEIGSPESVLIGGQREKKDSPVLLDVTGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVNLRRIEEEPASVAESLARRLSDCGFPTKRRASSSGVTENVRKWKELVKKKEELVAKSRSRVALAWTLVALCCGSHASHIFHSLGIHIAHGSLWEILHSSYVKGGLALGALLGPGRELLFDGLNAFKKGSPNMNSLVGFGSIAAFIISSIPLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSTEGSPSTDTVLCSDAICVEVPTDDIRVGDSVLVLPGETIPIDGKVISGRSVVDESMLTGESLPVFKEKGLTVSAGTINWDGPLRIEASSTGSNTVISKIVRMVEEAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFVGSQIFPDVLLNDMAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLARINYIALDKTGTLTKGKPVVSAIGSIHYGESEILRIAAAVEKTASHPIAKAIINKAESLELILPVTKRQLVEPGFGTLAEVDGHLIAVGSLEWVHERFQTKVNPSDLTNLEHSLMNHSSNTASSKYSKTVVYVGREGEGIIGAIAIADTVREDAESTVMRLKQKGIKTVLLSGDREEAVATVADTVGIENDFVKASLSPQQKSGFISSLTAAGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQATMAKVYQNLSWAVAYNVVAIPIAAGVLLPQFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSPIPRKGSNS* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1344 883 SUPERFAMILY HMA, heavy metal-associated domain 77 142 IPR036163 GO:0046872
Vra5g1344 883 ProSitePatterns E1-E2 ATPases phosphorylation site. 547 553 IPR018303 -
Vra5g1344 883 Pfam haloacid dehalogenase-like hydrolase 541 772 - -
Vra5g1344 883 SFLD p-type atpase 528 811 IPR044492 -
Vra5g1344 883 Gene3D - 556 689 IPR023299 GO:0000166
Vra5g1344 883 Gene3D - 301 432 - -
Vra5g1344 883 Pfam Heavy-metal-associated domain 79 142 IPR006121 GO:0046872
Vra5g1344 883 Gene3D - 69 148 - -
Vra5g1344 883 PANTHER ATP7, ISOFORM B 74 871 - -
Vra5g1344 883 PRINTS P-type cation-transporting ATPase superfamily signature 378 392 - -
Vra5g1344 883 PRINTS P-type cation-transporting ATPase superfamily signature 545 559 - -
Vra5g1344 883 PRINTS P-type cation-transporting ATPase superfamily signature 681 692 - -
Vra5g1344 883 PRINTS P-type cation-transporting ATPase superfamily signature 703 713 - -
Vra5g1344 883 PRINTS P-type cation-transporting ATPase superfamily signature 758 777 - -
Vra5g1344 883 CDD P-type_ATPase_HM 177 868 - -
Vra5g1344 883 CDD HMA 79 143 IPR006121 GO:0046872
Vra5g1344 883 ProSiteProfiles Heavy-metal-associated domain profile. 76 146 IPR006121 GO:0046872
Vra5g1344 883 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 330 850 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g1344 883 Pfam E1-E2 ATPase 331 525 - -
Vra5g1344 883 SUPERFAMILY Calcium ATPase, transmembrane domain M 281 539 IPR023298 -
Vra5g1344 883 Gene3D - 536 809 IPR023214 -
Vra5g1344 883 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 547 636 IPR023299 GO:0000166
Vra5g1344 883 SUPERFAMILY Calcium ATPase, transduction domain A 338 428 IPR008250 -
Vra5g1344 883 SFLD C1.7: P-type atpase like 528 811 - -
Vra5g1344 883 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 249 869 IPR027256 GO:0006812|GO:0016021|GO:0019829
Vra5g1344 883 SUPERFAMILY HAD-like 543 866 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1344 Vra-Chr5 20325128 20333572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1344 240 875 Primary Pumps ATPases AT1G63440 36.687 9.27e-114 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1344 K17686 - gmx:100127402 1506.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1344 5 20325128 20333572 Vra5g1344 5 20325128 20333572 ECH