Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1342 ATGGCGTTTTGGTTTGGATTCCTTCTTCTGGTTCTTCTCCTTCCTTTGGATTTGGTGAAATCTGACGACGGAGCAACGTTGTTGGAGATGAAAAAGTCGTTGAGGGATGTGGATAACGTTCTGTTTGACTGGACTGACTCACCTTCTTCAGATTATTGTGTCTGGAGAGGGGTTACTTGTGAAAATGTCACTTTCAATGTGGTTGCACTGAATCTTTCAGGACTGAATCTTGAAGGCGAGATTTCACCTGCATTAGGGAGGCTTAGCAGCTTGGTCTCCATTGATCTCAAGGAAAACCGTTTATCTGGGCAGATACCTGATGAACTTGGTGACTGTTCCTCCTTGAAAAACGTAGATTTCTCTTTTAATGAGATTCGGGGAGATATACCGTTTTCAATTTCGAAGATGAAACAACTGGAAAATCTAATCTTGAAAAATAATCAGCTCATTGGACCAATTCCTTCAACTCTCTCTCAGGTTCCTAACTTGAAGATTCTAGACCTGGCACAGAATAATCTCAGCGGTGAGATACCAAGACTTATATACTGGAATGAAGTTTTGCAATATCTTGGCTTGCGAGGTAACAATTTGTCGGGTTCACTTTCTCCAGACATATGCCAGTTAACTGGATTGTGGTATTTTGACGTGAGAAACAATAGCTTGACAGGCAATATTCCTGAAAACATAGGCAATTGTACTGCTTTCCAGATCTTGGATTTATCTTACAACAAGCTATCTGGAGAGATACCATTCAATATTGGTTTCCTACAAGTAGCAACTCTGTCATTGCAAGGCAATAAACTCTCAGGTTATATTCCATCAGTTATCGGTCTGATGCAAGCCCTTACTGTTTTAGATTTGAGCTGTAACATGCTAAGCGGGCCAATCCCTCCTATATTGGGAAATTTAACTTACACAGAAAAACTGTATTTATATGGAAACAAGCTGACCGGTCGCATCCCCCCGGAGCTCGGAAACATGACGAAGCTTCACTATTTGGAATTGAATGATAACCTTTTAAGTGGACAAATCCCGCCTGAGCTTGGAAAGCTTACTGATCTGTTTGACTTAAATGTTGCCAATAACAACCTTGAGGGTCCAATTCCCGAGAATCTCGGCTCATGTAAAAACCTCAACAGCCTAAATGTGCATGGGAATAAGATGAGTGGAACAATTCCCTCAGCTTTTCAAAGCTTGGAGAGTATGACCTATCTGAATCTTTCTTCAAACAATTTTCAAGGGTCTATTCCAATTGAACTTTCACGGATCGGAAATTTGGATACACTGGATATATCAAATAATAATATAATTGGTTCCATTCCTTCTTCCATTGGTGATTTGGAACATCTTCTGAAATTGAATCTGAGCAGAAATCATTTAACAGGCTTTATTCCGGCAGAGTTTGGTAATCTAAGAAGTGTCATGGATGATGTGAAGTCGTCTAATATATTACTAGACAAAGACTTGGAGCCCCATCTCACCGATTTTGGCATTGCAAAGAGTCTATGCCCTTCTAAGTCCCACACTTCCACTTACATAATGGGCACCATTGGCTACATAGACCCCGAGTATGCTAGAACTTCTCGTCTCACTGAGAAGTCTGATGTGTATAGCTACGGTATTGTATTACTTGAGCTTCTAACTGGGAGGAAAGCTGTGGAAAACGAATCAAACCTTCATCATCTGATTTTGTCCAAGACAGCTAATGATGCTGTAATGGAAACCGTTGACCCAGATATCAGTGCCACATGCAAGGACATGGGAGCAGTAAAAAAGGTTTTTCAGCTTGCTCTTTTGTGCACCAAGAAGCAACCAGTGGATAGACCCACAATGCACGAGGTGACCCGCGTTCTGGGGAGTCTAGTGCCACCAAAAGAATCAGTCCCAACGCAAGTACTTTTACCTCATTCACAGCCATCTGCAAAAATGCAATCCTACAAGGATGAATACGCCAATCTTAAAGCTCCACACTTGGTCAACTGTCCATCCATCAGCACCTCTGATGCGCAACTCTTCCTCAAATTTGGAGAAGTAATATCTCAAAACAGCGAGTGA 2055 0.4151 MAFWFGFLLLVLLLPLDLVKSDDGATLLEMKKSLRDVDNVLFDWTDSPSSDYCVWRGVTCENVTFNVVALNLSGLNLEGEISPALGRLSSLVSIDLKENRLSGQIPDELGDCSSLKNVDFSFNEIRGDIPFSISKMKQLENLILKNNQLIGPIPSTLSQVPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLSGSLSPDICQLTGLWYFDVRNNSLTGNIPENIGNCTAFQILDLSYNKLSGEIPFNIGFLQVATLSLQGNKLSGYIPSVIGLMQALTVLDLSCNMLSGPIPPILGNLTYTEKLYLYGNKLTGRIPPELGNMTKLHYLELNDNLLSGQIPPELGKLTDLFDLNVANNNLEGPIPENLGSCKNLNSLNVHGNKMSGTIPSAFQSLESMTYLNLSSNNFQGSIPIELSRIGNLDTLDISNNNIIGSIPSSIGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDDVKSSNILLDKDLEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVENESNLHHLILSKTANDAVMETVDPDISATCKDMGAVKKVFQLALLCTKKQPVDRPTMHEVTRVLGSLVPPKESVPTQVLLPHSQPSAKMQSYKDEYANLKAPHLVNCPSISTSDAQLFLKFGEVISQNSE* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1342 684 SMART serkin_6 366 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1342 684 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 476 - -
Vra5g1342 684 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 477 671 - -
Vra5g1342 684 Pfam Leucine rich repeat 138 197 IPR001611 GO:0005515
Vra5g1342 684 Pfam Leucine rich repeat 377 436 IPR001611 GO:0005515
Vra5g1342 684 Pfam Protein kinase domain 476 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1342 684 SMART LRR_typ_2 279 303 IPR003591 -
Vra5g1342 684 SMART LRR_typ_2 399 423 IPR003591 -
Vra5g1342 684 SMART LRR_typ_2 88 112 IPR003591 -
Vra5g1342 684 SMART LRR_typ_2 447 470 IPR003591 -
Vra5g1342 684 SMART LRR_typ_2 327 351 IPR003591 -
Vra5g1342 684 SMART LRR_typ_2 208 232 IPR003591 -
Vra5g1342 684 SMART LRR_typ_2 160 184 IPR003591 -
Vra5g1342 684 Gene3D Ribonuclease Inhibitor 394 472 IPR032675 -
Vra5g1342 684 SUPERFAMILY L domain-like 23 256 - -
Vra5g1342 684 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 7 476 - -
Vra5g1342 684 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 477 671 - -
Vra5g1342 684 SUPERFAMILY Protein kinase-like (PK-like) 477 645 IPR011009 -
Vra5g1342 684 Gene3D Ribonuclease Inhibitor 20 183 IPR032675 -
Vra5g1342 684 Gene3D Ribonuclease Inhibitor 296 393 IPR032675 -
Vra5g1342 684 Gene3D Ribonuclease Inhibitor 184 295 IPR032675 -
Vra5g1342 684 Gene3D Transferase(Phosphotransferase) domain 1 473 630 - -
Vra5g1342 684 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Vra5g1342 684 Pfam Leucine Rich Repeat 450 471 IPR001611 GO:0005515
Vra5g1342 684 ProSiteProfiles Protein kinase domain profile. 306 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1342 684 SUPERFAMILY L domain-like 254 473 - -
Vra5g1342 684 ProSiteProfiles Leucine-rich repeat profile. 162 184 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1342 Vra-Chr5 20308737 20316521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1342 70 683 Receptor kinase-like Gene Family AT5G07180 33.942 2.71e-87 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vra5g1342 Pkinase 2.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1342 K20718 - gmx:100804875 843.573