Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1341 ATGCCTGAACCAATCATGAATATGCGCCATGGCACTAAGGTTTGGGTTCACGACAGGGATTTCGCGTGGATTCCAGCTGAAGTAGTCGAATCTTCAGCAAAGAAAGTTACCGTTGCCACTGCTTCTGGCCATAAGGTTGTTGCTCTTTCCGAGAACGTGTTTCCCAGGGATGCGGACGAAGATGAGCATGGAGGAGTGGAAGATATGACGAGGTTGGCTTACTTGAATGAGCCAGGGGTGTTGTACAATCTCCGCAGAAGATATGCGCTGAATGATATCTATACTTATACAGGGAGCATCTTAATAGCTGTTAATCCATTCACAAAGCTTCCCCATCTGTATGACATTCATATGATGGAGCAGTATAAGGGAACTCCATTTGGTGAGCTTAGTCCACATGTATATGCTGTTGCTGATGCTTCTTATAGAGCTATGATGAATGGAGGTCAAAGCCAATCTATCTTGGTTAGTGGTGAAAGTGGTGCAGGGAAAACAGAGACTACAAAATTGATTATGCAATATCTTACCTTTGTTGGTGGGCGTGCTGCTGGTGATGACAGAACTGTTGAACAACAAGTTCTTGAATCGAATCCACTCTTAGAGGCATTTGGCAATGCAAGGACTGTCAGGAATGACAATTCAAGCCGTTTTGGGAAGTTTGTTGAAATTCAATTTGATTCAAATGGTAGAATATCTGGTGCTGCAATTAGAACTTACTTGCTAGAAAGATCACGAGTAGTACAGATAACAGATCCAGAACGAAATTATCACTGCTTTTATCAGTTGTGTGCATCTGAAAGGGATGTAGAGAAGTATAAGTTGGGACATCCAAGTCACTTCCACTATTTGAATCAAAGTAAAGTCTACGAATTAGATGGCATAAATAGTGCTGAAGAGTACACGAAGACAAGGAGAGCAATGGATATTGTTGGCATAAGTCATGAGGATCAGGAAGCCATATTTTGCACCTTGGCTGCAATTTTACATTTGGGAAACATTGAATTTTCTCCTGGTAAAGAGCATGACTCATCAGTACTAAAAGATGATAAATCAAGATTTCATTTGCAGATGGCTGCCGATCTTTTCAGGTGTGATTTGAACCTACTACTTGCAACATTATGTACGCGTTCAATACAAACCCGAGAAGGAAATATTGTCAAAGCTCTTGATTGTAATGCTGCTGTTGCCGGCCGGGATGCTTTGGCAAAAACTGTCTATGCTCGTTTATTTGATTGGCTTGTTGATAAGATCAATAGTTCTGTGGGCCAAGATATCAATTCCCAGATGCAAATTGGAGTTTTGGATATTTATGGTTTTGAGTGTTTTAAGGATAATAGTTTTGAGCAATTCTGCATCAACTTTGCAAATGAAAAGCTTCAGCAACATTTTAATCAGCATGTTTTCAAGATGGAGCAGGAGGAATACACCAAAGAAGAAATTAACTGGAGCTACATTGAATTTATAGACAACCAAGATGTTTTAGATTTGATTGAAAAGAAACCCATTGGGATCATTGCTCTGTTAGATGAAGCTTGCATGTTTCCAAAATCAACGCATGAAACATTCTCTACCAAGTTGTTTAAACACTTCCTGTCACACCCTCGGTTAGAAAAGGAGAAGTTTTCAGAAACAGATTTTACCCTTTCTCATTATGCTGGAAAGGTCACTTACCATACAGAGACATTCTTAGACAAAAATCGTGATTATGTAGTTGTAGAACATTGTAATCTATTATCCTCTTCAAAGTTGCCATTTGTGTCGGCTCTTTTTCCTTTGCTAACAGAGGAATCTTCAAGGTCATCATACAAGTTTTCTTCTGTGGCTTCCAGATTTAAGCAACAACTGCAAGCACTCATGGAAACACTTAACACAACAGAACCTCATTACATTCGTTGTGTCAAGCCAAGTTCTTTGAATCGACCACAAAAGTTTGAGAATACTAGTGTCATACACCAATTACGTTGTGGGGGTGTCCTTGAGGCTGTTAGAATAAGTTTGGCAGGTTACCCCACTCGTAGGATATACTCAGAGTTTGTAGACCGCTATGGATTAATAGCTCCCGAATTTATGGATGGAAGTTACGATGATAAAGCTGTAACCCTGAAAATATTGCAAAAGCTAAAGCTTGAGAATTTTCAGTTAGGTAGGACCAAAGTGTTTCTGAGGGCCGGTCAAATTTGCATTTTAGACTCTCGACGTGCTGAAGTTTTGGACAATGCTGCAAAATGTATTCAGCGTCAACTGCGGATGTTTATTGCTCGCAGGGATTTCATCTCAATTTGTGCCGCTACACTTTCTCTTCAAGCATGCTGCAGGGGTTGCATTAGCCGAAAGATATATGCTTTTAAGCGGGAGACAGCAGCAGCTATTTCCATTCAAAAATACAGGCGTATGTGTCTGATGAGACATGCTTATGTGAAATTGTGTTATTCTGCTATTATTGTGCAATCCAATGTTCGTGGTTTCACAACTCGACAAAGGTTGTTGCGTAGAAAGGAGCACAAAGCTGCTACTTACATTCAGGCCTATTGGAGGATGTGCAAGGTTCGATCTGCATTCCTAAAACATCAAAATTCAGTTGTAGCAATGCAATGCCTTTGGCGATGCAGACAAGCAAAAAGAGAGCTTCGTAGACTTAAGCAAGAGGCTAATGAAGCGGGAGCCTTGCGTTTAGCTAAGAATAAACTTGAGAAACAATTGGAAGAGCTTACATGGCGTTTGCATCTAGAGAAAAAAATTAGGATTTCTAATGAAGAGGTTAAGCATGTTGAGATTTCCAAATTACAGAAGATGGTGGAGGCTCTGAATCTTGAATTAGATGCAGCTAAACTTGCAACAATTAATGAGTGCAACAGAAATGCAGTTTTGCAAAATCAGTTGAAGTTATCAGTAAAGGAAAAATCTTCTTTAGAAAGAGAGCTAGTTGCAATGGATGAAGTGCAAAAGGAAAATGCTCAATTAAAGGGTTCACTGGAGGCTTTTGAAAAGAAGAGCATGGCTTTGGAGCTTGAACTTGTTAGTGCTCGGAAAGACCATGACAAAACCATTCTGAAAATGAGGGAGTTTGAACACAAGTGTTCTCAACTTGGGCAAGATGTGAAAAGCCTCCAGGAAAAGCTATTTAGTTTAGAGGATGAAAATCATGTGCTTCGTCAGAAAGCCTTAACTGTATCTCCTAAGAGTAACTATCGAGGTTTAACAAAGTCATTTTCAGAAAAACAACCAAATGCAGTAGCTCCCTGCACTGATCAAAAGCCCATATTTGAATCGCCCACACCTACAAAACTTATTTCCTCTTTTACACATGGAAGTTTCTCAGACTCTCGTAGATCAAAATTAACGGCAGAGAAGCACCAGGATAACAATGAACTCCTCTCTAGGTGTATTAAAGAGGATTTGGGGTTCAAAAATGGTAAACCTCTGGCAGCTTGTATCATATACAAATGTCTTCATCATTGGCATGCCTTTGAATCTGAGCGCACGGCCATATTTGATTTCATTGTTGATGGAATTAATGATGTCCTAAAGGTTAGAGACGATGACATTATCTTGCCATATTGGCTGTCCAATACATCTGCACTTCTATGCCTCTTGCAAAGGAACTTGCATTCAAATGGCTTTTCAACAGCCACTGCTCAACGCTATGCCAGATCATCTGGCTTGACCAGCCGAATTGGGCATAAGCTGAGGTCTCCATTGAAGCTTATTGGATATGATGATAGTACAGTACATGTGGAAGCAAGATATCCAGCTATTCTTTTTAAACAACAGCTAACTGCTTGTGTAGAGAAGATTTATGGCCTTATACGTGATAATTTGAAAAAGGAGCTTTCTCCACTTCTTGCATCATGTATTCAGGCACCTAAAACAGGTCGGATGCTAGGTGGAAAATTATCTAAGTCTCCTGGTGGGCTTCCTCCACAATCACCTGTTGCTCAATGGGACAACATCATCAAATTTTTGGATTCACTCATGAGCAGAATGCGTGTAAATCATGTACCATCCTTTTTCATCCGCAAGCTGGTTACTCAGGTTTTTTCCTTCACCAACATTACACTCTTCAATAGCCTTCTGTTGCGACGTGAATGTTGCACTTTCTCAAATGGTGAATATGTAAAGTCTGGGCTTGCAGAACTGGAGAAATGGATAGTTAATGCAAAGGAGGAGTATGCAGGAACATCCTGGCACGAACTGAACTATATAAGGCAAGCTGTTGGGTTTCTGGTAATACACCAGAAGAGAAAAAAATCTTTGGAAGAAATTCGGCAGGATCTTTGTCCGGCACTAACAGTGAGGCAAATTTATCGGATCTGTACTATGTACTGGGACGACAAATATGCAACCCAAAGTGTGTCCAACGAGGTAGTTAATCAAATGAGGGACATTGTGGGCAGGGACAATCAGAATTTGACAACTAATTCTTTCTTGTTGGACGATGATATGAGCATTCCTTTTTCTGCTGAAGACATAGATATGGCAATCCCTGCTATAAATACTGATGATATCGATCCCCCAGCATTTTTGTGCGAATATCCCTGTGCCCAGTTTCTTACTTTACATGAGAAATAA 4569 0.4018 MPEPIMNMRHGTKVWVHDRDFAWIPAEVVESSAKKVTVATASGHKVVALSENVFPRDADEDEHGGVEDMTRLAYLNEPGVLYNLRRRYALNDIYTYTGSILIAVNPFTKLPHLYDIHMMEQYKGTPFGELSPHVYAVADASYRAMMNGGQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDSNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASERDVEKYKLGHPSHFHYLNQSKVYELDGINSAEEYTKTRRAMDIVGISHEDQEAIFCTLAAILHLGNIEFSPGKEHDSSVLKDDKSRFHLQMAADLFRCDLNLLLATLCTRSIQTREGNIVKALDCNAAVAGRDALAKTVYARLFDWLVDKINSSVGQDINSQMQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFIDNQDVLDLIEKKPIGIIALLDEACMFPKSTHETFSTKLFKHFLSHPRLEKEKFSETDFTLSHYAGKVTYHTETFLDKNRDYVVVEHCNLLSSSKLPFVSALFPLLTEESSRSSYKFSSVASRFKQQLQALMETLNTTEPHYIRCVKPSSLNRPQKFENTSVIHQLRCGGVLEAVRISLAGYPTRRIYSEFVDRYGLIAPEFMDGSYDDKAVTLKILQKLKLENFQLGRTKVFLRAGQICILDSRRAEVLDNAAKCIQRQLRMFIARRDFISICAATLSLQACCRGCISRKIYAFKRETAAAISIQKYRRMCLMRHAYVKLCYSAIIVQSNVRGFTTRQRLLRRKEHKAATYIQAYWRMCKVRSAFLKHQNSVVAMQCLWRCRQAKRELRRLKQEANEAGALRLAKNKLEKQLEELTWRLHLEKKIRISNEEVKHVEISKLQKMVEALNLELDAAKLATINECNRNAVLQNQLKLSVKEKSSLERELVAMDEVQKENAQLKGSLEAFEKKSMALELELVSARKDHDKTILKMREFEHKCSQLGQDVKSLQEKLFSLEDENHVLRQKALTVSPKSNYRGLTKSFSEKQPNAVAPCTDQKPIFESPTPTKLISSFTHGSFSDSRRSKLTAEKHQDNNELLSRCIKEDLGFKNGKPLAACIIYKCLHHWHAFESERTAIFDFIVDGINDVLKVRDDDIILPYWLSNTSALLCLLQRNLHSNGFSTATAQRYARSSGLTSRIGHKLRSPLKLIGYDDSTVHVEARYPAILFKQQLTACVEKIYGLIRDNLKKELSPLLASCIQAPKTGRMLGGKLSKSPGGLPPQSPVAQWDNIIKFLDSLMSRMRVNHVPSFFIRKLVTQVFSFTNITLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVNAKEEYAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRICTMYWDDKYATQSVSNEVVNQMRDIVGRDNQNLTTNSFLLDDDMSIPFSAEDIDMAIPAINTDDIDPPAFLCEYPCAQFLTLHEK* 1523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1341 1522 SMART DIL_2 1340 1447 IPR002710 -
Vra5g1341 1522 Gene3D Myosin VI head, motor domain, U50 subdomain 313 603 - -
Vra5g1341 1522 PRINTS Myosin heavy chain signature 94 113 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g1341 1522 PRINTS Myosin heavy chain signature 151 176 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g1341 1522 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g1341 1522 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g1341 1522 PRINTS Myosin heavy chain signature 483 511 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g1341 1522 Pfam DIL domain 1341 1444 IPR002710 -
Vra5g1341 1522 Gene3D - 834 884 - -
Vra5g1341 1522 Gene3D - 787 833 - -
Vra5g1341 1522 Gene3D - 736 786 - -
Vra5g1341 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 783 IPR027417 -
Vra5g1341 1522 Coils Coil 977 1011 - -
Vra5g1341 1522 Pfam IQ calmodulin-binding motif 834 853 IPR000048 GO:0005515
Vra5g1341 1522 Pfam IQ calmodulin-binding motif 811 828 IPR000048 GO:0005515
Vra5g1341 1522 Pfam IQ calmodulin-binding motif 739 757 IPR000048 GO:0005515
Vra5g1341 1522 Coils Coil 1019 1053 - -
Vra5g1341 1522 Gene3D - 669 735 - -
Vra5g1341 1522 CDD MYSc_Myo11 78 722 IPR036018 -
Vra5g1341 1522 Coils Coil 925 945 - -
Vra5g1341 1522 Pfam Myosin head (motor domain) 66 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g1341 1522 Gene3D - 440 625 - -
Vra5g1341 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 883 IPR027417 -
Vra5g1341 1522 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 9 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vra5g1341 1522 ProSiteProfiles IQ motif profile. 833 862 IPR000048 GO:0005515
Vra5g1341 1522 Gene3D Kinesin motor domain 67 664 IPR036961 -
Vra5g1341 1522 PANTHER PROTEIN OPAQUE1-LIKE 8 1519 - -
Vra5g1341 1522 SMART iq_5 784 806 IPR000048 GO:0005515
Vra5g1341 1522 SMART iq_5 759 781 IPR000048 GO:0005515
Vra5g1341 1522 SMART iq_5 832 854 IPR000048 GO:0005515
Vra5g1341 1522 SMART iq_5 736 758 IPR000048 GO:0005515
Vra5g1341 1522 SMART iq_5 807 829 IPR000048 GO:0005515
Vra5g1341 1522 SMART iq_5 855 877 IPR000048 GO:0005515
Vra5g1341 1522 ProSiteProfiles IQ motif profile. 810 837 IPR000048 GO:0005515
Vra5g1341 1522 ProSiteProfiles Dilute domain profile. 1165 1465 IPR002710 -
Vra5g1341 1522 PANTHER MYOSIN 8 1519 - -
Vra5g1341 1522 Gene3D - 254 311 - -
Vra5g1341 1522 ProSiteProfiles IQ motif profile. 762 789 IPR000048 GO:0005515
Vra5g1341 1522 Coils Coil 862 913 - -
Vra5g1341 1522 ProSiteProfiles IQ motif profile. 856 885 IPR000048 GO:0005515
Vra5g1341 1522 CDD MyosinXI_CBD 1116 1488 IPR037975 GO:0007015
Vra5g1341 1522 SMART MYSc_2a 58 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g1341 1522 ProSiteProfiles Myosin motor domain profile. 64 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra5g1341 1522 Coils Coil 953 973 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1341 Vra-Chr5 20285566 20307347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1341 6 1518 Myosins gene family AT4G33200 71.664 0.0 2221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1341 K10357 - gmx:100796413 2768.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1341 5 20285566 20307347 Vra5g1341 5 20285566 20307347 ECH
Vra6g1708 6 33247279 33281688 Vra5g1341 5 20285566 20307347 PCT