Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1331 ATGAATTTCAACCATGATTCATCAGACCATAACCAAAATCAAAGTAAAAAACGAAAGCAACCCGATGTTGATAATTATACATCCCTGGAATTGTCTACTTCCAACATGAACCCCAGAAGTTATCAGATAGAAGTGTTTGAAGTTGCACGGAGAAGGAACACAATAGCCGTGTTGGATACAGGCTCTGGTAAGACCTTGATTGCGGTGATGATTATGAAAGAGGTTGGTCAAACCATCAAGTCTTTGGGAATGAAGAAGCTGATTGTTTTCTTGGCTCCCACAGTTCATCTAGTTAATCAGCAATTCAATAATATAAGATATCTGACAGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAGACATGGGAGCAGGAGATTAGTACCAATGATGTATTGGTTATGACACCTCAGATTCTTTTGGATGCCTTAAGAAAAGCATTCATGCGTATGGAAATGATATGCTTGATTGTTATTGATGAATGTCATAGAGCAACTGGCAATCATCCCTATACAAAAATAATGAAGGAATTTTATCACCAAGCAAAGGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCGGTTGGTAAAAGAGGTGTTTCCTCCACTACGGATTGCGAGGTTCAAATATCAGAACTTGAAAGCATCTTGGATTCTCAGAGGTATACTGTTGAAGATCGGGCAGAGATGAGTAGATATATATTGTCTGCTAAAGAGAGTTGTAGATTTCATGACCAAGCACGATTTTCTGCCTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTCAAAGTTTGATGCATTGTTATCAGAAAATAAAAGCAACTATATGGATGTGGAGAATAAATTTAAGACACTGTCTCAGCGAATGTCCAATGAACTTGGAAAAATTTTACATTGCCTTGAAGATCTTGGAATCCTATGTGCTTATGAGGCAGTTAAAATCTGTCACGAGAATTTCTCCAAAACTGAAGGAACGTGTGAAACTTACAGAACAGATGATAAAAACATTTTGGGGGTTGATTTTGATTATTCAAAGGCAGAAGATATGGGACACATATCTCCCAAGTTACTTGAACTTATTAAAATCTTCCAATCACTTGGAGAATCTAGTCAGGTGTCGTGCCTTATTTTTGTTGATAGAATCATTACAGCTAAGGTGATTGAAAGATTTGCAAAGAAAGTTCCCCAAATTTCTCATTTCTCAGTTTCCTATTTAACTGGAAACAGTACATCGGTTGATGCTGTGGCTCCTAAAAGGCAGAAGGAAATATTGGAATCTTTTCGCTCTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATAAGATTTGACCTCCCAAAGACAGTTCGTAGTTATGTCCAATCTCGCGGAAGATCTAGGCAGGCTAACTCCCAATTTGTTGTGATGTTGGAGAGGGGAAACCTGAAGCAAAGAAATCAACTCTTTGACATCATTAGGAGTGAGCGCTCCATGACTGATGCATCTATACATAAGGACCGTGAATCTAATTTAAGGGTATTTACAGTGGGGAAAACAGATACATACTATGTGGATTCTACTGGAGCTTGTGTGACTTTAGATTCTAGTGTAAATCTTATCCACCGATACTGTGGAACACTTCCCCAAGATCAGTACTCCTCTGCAAAGCCCACTTATGTGTCTCTGCCAGTGGAAGGGGGTTACCAATGTAAATTAACATTGCCATCTAATTCAGTCCTCCAGACAATAATTGGTCCATTAGGAAAAGATATTCGTTTGGCAAGGCATCTTGCTTGTTTCGAAGCTTGTAAGAAGTTGCATCAAATGGGTGCTTTAAATGAACATTTGGTTCCATTCATCGAAGATGTTTCAGAAGATGACCATATCGTGAAAAATAAAGAATCTAGTTCGGGGGCAGGAACCACAAAGAGAAAGGAGTTACATGGAACAGCCAACATTTGTGCACTAAGTGGTGCATGGGGAGACAAACTTGATGTTGAAGCCAGATTTTTTGCCTACAAACTAGAATTCACATGTAGTATTGTTAGCGAAATATACTCTGGGTTTGTTCTTTTGGTTGAGTCAAAGCTTGATGATGATGTGGGAAATATTGAATCAGATCTTTATTTAGTCTCAAAGGTCGTGAAAGCTTCTGTCTCTTCATGTGGGCAAGTTGATTTGGATGCTAAACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGTAGATTGGTGTTTAGGTCAAAATCGGCAGGAGGAGAAACAGAATTTTTACTACAAAAAGACACAAAATCATTATGGAGAGCAAAACACTTATATTTGCTTCTACCACTTGAGAAATTGAATGGTATTTGTGAGGGAGCCTTGCAAATTAATTGGCATGGAATTGATTCTTGTGCATCTGCTATCGAATTCTTAAGGAGAAGATATTCTTTGGTCACTGGAGATTGTGATGATAACGGAATAGTCAAATCACCTCAGGATACCAGTTCAGTGGAGATGGAATATGTTGGAACAAACAAGATTCACTTTGCTAATTGTGTGCTTGATGCTGACAATATAAAAAACACGTTGGTTTTGGCGATTCATACTGGAAAAATATATTGTATCATTGACATTGACAGTAACCTGTTTCCTGAAAGTTCTTTCTGTGGAAATAATGAAAAATCCAAGGAACACGTTACCTACTCAGATTATTTCAGTAAAAGGTATGGGATTACCCTGAGACATCCGAGACAGGCTCTTTTATTATTAAAGCAAAGTCATAATCCACACAATCTTCTTTTTAACTTTCATGAGGAAGATGCACGAGACAAATCATCACAAATTGGCTCTACAACCTCCAAAGTGCCTGCACATGTTCACCTCCCACCCGAGCTTTTATATGTTCTTGAATTTAAAAGAAACGTGTTGAGGTCATTTTACTTGTTGCCATCTCTAATGTACCGCATTGAGTCATTAATGTTATCTAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTAGCAAGTCCAACATAAATAGCTCACTGATTCTAGAGGCACTTACAACTTTGAGATGCAGTGAAAGTTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTAAAGTATGTGGTGAGCTGTCACCTCTTTCTTAAATATCCCAAGAAGCATGAAGGACAATTATCTGCCAAACGATCTCTAGCAGTTTGTAATTCAACCCTTCATAAATTGGCAATAGAACGTAAATTACAGGGTTATATTCGAGACTCTGCATTTGAACCACAACGTTGGGTTGCTCCGGGACAGCGTTCTATACACCCTGTTTGTTGTGATTGTGGATTGGAAACCCTTGAAGTGCCTTTAGATGTTAAATTCCACACCGAGGATCCCAAAGTTGTGGTTGGGAAGTTTTGTGACAGGGGTCACCGCTGGATGTGTTCTAAGACTATTTCTGACTGTGTTGAAGCTCTAATAGGAGCATACTATGTGGGGGGTGGACTATTTGCATCACTTAATGTGATGAAATGGCTTGGAATTGAAGCAGAACTTGAACTATCCTTGGTTGACGAAGCAATCACTGCTGCCTCTCTGCATACTTGCATGCCAAAAGAAAGTGAGATTGCAATCCTTGAAAAGAAAATTGGGTATGAATTTTCTGTCAAGGGACTCTTACTGGAGGCTATCACACATTTGTCTGAGAAGGAACTTGGGATTGGCTGTTGTTACGAGAGGCTTGAATTTCTTGGTGACTCAGTGTTGGACCTGCTTATCACATGGCATTTATATAAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTGCGATCTGCCTCTGTCAATAATGACAACTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCATCTCCTACATGGCTCAGGATTATTACTGAGCCAGATATCAGAATATGTTAAGGCCATTTCTGAATCGGATCCTAGATCACTTCCAAGCATTAGAGCTCCGAAGGCACTTGGAGATCTAGTGGAAAGTATTGTTGGCGCAATGCTAATTGATTCCAAGCTCGGTCTAGACCGAGTGTGGGAGGTTTTCTGTCCTCTCTTATCCCCCATAGTTACACCTGAAAAACTTGAATTGCCCCCGTTTCGTGAATTAAATGAATTGTGTGATTCTCTTGGGTACTGTATAAAAGTAAATGAAAACTGTGAAAAAAAGGGATCCATGATGCAAGTTGAGGTTAGTGTACAGTTGCCAAATGATTTGTTGGTTCGTGAAGGAAAGGGGCCAAATAAGAAAACTGCAAAAGGAGAAGCTTCTTTTCATTTGTTGAAGGACCTTGAGAAGCGGGGAATTTCATATTGTAATTTCATGTCCAAGGGAAAAAGGGATAATTCTGTCCATATCAATGATTCACCTCATCTCAAAATGGATTCTAGTGCTTGTTTTACTCTTAACGAAGAACATTCCTCAGAGTTACATAAAAGGAACAGATTTGATAAAACAAACCCAACTGAAAGTATTTTGCCTCTCAAATACTCTTCTGGTGACGACTTTGGTTTTAGTGCTCCAATTCCAGTTAAGTTATCAATTAAAACGAAAAAGGGAGGACCACGGACCACACTATTTGAGGTGTGTAAGAAACTTCAGTGGCCAGTGCCTGCATTTGATTCAACAGAATATAAAGATAGATCTCTATTTGAATCCTGTGAAGCTCTGCAAGGAAGCAAGGGACTGAACTGTTTTGTGTCGAAAGTTACCTTGTGCATACCCAAGTATGGAAATATAGAGTGCCAAGGAGAAGCTAGAAGTGATAAGAAAAGCTCCTTTGACTCTGCTGCAGTTAAAATGCTTCTTGAGCTGCAAAAATTGGGAAAAGTTGAAATTGATCCTCCCCTTTCTAGTTAA 4944 0.3902 MNFNHDSSDHNQNQSKKRKQPDVDNYTSLELSTSNMNPRSYQIEVFEVARRRNTIAVLDTGSGKTLIAVMIMKEVGQTIKSLGMKKLIVFLAPTVHLVNQQFNNIRYLTDFQVEEYYGAKGVDTWTLKTWEQEISTNDVLVMTPQILLDALRKAFMRMEMICLIVIDECHRATGNHPYTKIMKEFYHQAKEKPKIFGMTASPVGKRGVSSTTDCEVQISELESILDSQRYTVEDRAEMSRYILSAKESCRFHDQARFSALSLKPKIEALWSKFDALLSENKSNYMDVENKFKTLSQRMSNELGKILHCLEDLGILCAYEAVKICHENFSKTEGTCETYRTDDKNILGVDFDYSKAEDMGHISPKLLELIKIFQSLGESSQVSCLIFVDRIITAKVIERFAKKVPQISHFSVSYLTGNSTSVDAVAPKRQKEILESFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERGNLKQRNQLFDIIRSERSMTDASIHKDRESNLRVFTVGKTDTYYVDSTGACVTLDSSVNLIHRYCGTLPQDQYSSAKPTYVSLPVEGGYQCKLTLPSNSVLQTIIGPLGKDIRLARHLACFEACKKLHQMGALNEHLVPFIEDVSEDDHIVKNKESSSGAGTTKRKELHGTANICALSGAWGDKLDVEARFFAYKLEFTCSIVSEIYSGFVLLVESKLDDDVGNIESDLYLVSKVVKASVSSCGQVDLDAKQMMKAKCFHELFFNGLFGRLVFRSKSAGGETEFLLQKDTKSLWRAKHLYLLLPLEKLNGICEGALQINWHGIDSCASAIEFLRRRYSLVTGDCDDNGIVKSPQDTSSVEMEYVGTNKIHFANCVLDADNIKNTLVLAIHTGKIYCIIDIDSNLFPESSFCGNNEKSKEHVTYSDYFSKRYGITLRHPRQALLLLKQSHNPHNLLFNFHEEDARDKSSQIGSTTSKVPAHVHLPPELLYVLEFKRNVLRSFYLLPSLMYRIESLMLSSQLREEIDGQTSKSNINSSLILEALTTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSAKRSLAVCNSTLHKLAIERKLQGYIRDSAFEPQRWVAPGQRSIHPVCCDCGLETLEVPLDVKFHTEDPKVVVGKFCDRGHRWMCSKTISDCVEALIGAYYVGGGLFASLNVMKWLGIEAELELSLVDEAITAASLHTCMPKESEIAILEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITWHLYKSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHGSGLLLSQISEYVKAISESDPRSLPSIRAPKALGDLVESIVGAMLIDSKLGLDRVWEVFCPLLSPIVTPEKLELPPFRELNELCDSLGYCIKVNENCEKKGSMMQVEVSVQLPNDLLVREGKGPNKKTAKGEASFHLLKDLEKRGISYCNFMSKGKRDNSVHINDSPHLKMDSSACFTLNEEHSSELHKRNRFDKTNPTESILPLKYSSGDDFGFSAPIPVKLSIKTKKGGPRTTLFEVCKKLQWPVPAFDSTEYKDRSLFESCEALQGSKGLNCFVSKVTLCIPKYGNIECQGEARSDKKSSFDSAAVKMLLELQKLGKVEIDPPLSS* 1648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1331 1647 Gene3D Ribonuclease III domain 1221 1390 IPR036389 GO:0004525|GO:0006396
Vra5g1331 1647 Gene3D - 32 268 IPR027417 -
Vra5g1331 1647 ProSiteProfiles PAZ domain profile. 872 986 IPR003100 GO:0005515
Vra5g1331 1647 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 551 641 IPR005034 GO:0016891
Vra5g1331 1647 Gene3D Ribonuclease III domain 1012 1194 IPR036389 GO:0004525|GO:0006396
Vra5g1331 1647 Pfam PAZ domain 872 1007 IPR003100 GO:0005515
Vra5g1331 1647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 492 IPR027417 -
Vra5g1331 1647 Pfam Type III restriction enzyme, res subunit 36 202 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vra5g1331 1647 Gene3D Dicer dimerisation domain 546 643 IPR038248 -
Vra5g1331 1647 CDD SF2_C_dicer 362 492 - -
Vra5g1331 1647 SUPERFAMILY PAZ domain 872 986 IPR036085 GO:0005515
Vra5g1331 1647 PANTHER DICER-RELATED 25 1638 - -
Vra5g1331 1647 CDD RIBOc 1030 1194 IPR000999 GO:0004525|GO:0006396
Vra5g1331 1647 Gene3D - 1556 1636 - -
Vra5g1331 1647 MobiDBLite consensus disorder prediction 10 24 - -
Vra5g1331 1647 Gene3D - 353 519 IPR027417 -
Vra5g1331 1647 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 367 522 IPR001650 -
Vra5g1331 1647 SMART helicmild6 397 484 IPR001650 -
Vra5g1331 1647 SUPERFAMILY RNase III domain-like 1223 1387 IPR036389 GO:0004525|GO:0006396
Vra5g1331 1647 SMART ultradead3 34 233 IPR014001 -
Vra5g1331 1647 CDD DEXHc_dicer 36 234 - -
Vra5g1331 1647 SMART PAZ_2_a_3 847 1010 IPR003100 GO:0005515
Vra5g1331 1647 Pfam Ribonuclease III domain 1260 1366 IPR000999 GO:0004525|GO:0006396
Vra5g1331 1647 Pfam Ribonuclease III domain 1048 1182 IPR000999 GO:0004525|GO:0006396
Vra5g1331 1647 Pfam Helicase conserved C-terminal domain 370 481 IPR001650 -
Vra5g1331 1647 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 25 1638 - -
Vra5g1331 1647 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g1331 1647 ProSitePatterns Ribonuclease III family signature. 1260 1268 IPR000999 GO:0004525|GO:0006396
Vra5g1331 1647 Gene3D paz domain 861 993 - -
Vra5g1331 1647 CDD RIBOc 1240 1388 IPR000999 GO:0004525|GO:0006396
Vra5g1331 1647 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 220 IPR014001 -
Vra5g1331 1647 SUPERFAMILY RNase III domain-like 1022 1202 IPR036389 GO:0004525|GO:0006396
Vra5g1331 1647 SMART riboneu5 1030 1203 IPR000999 GO:0004525|GO:0006396
Vra5g1331 1647 SMART riboneu5 1239 1390 IPR000999 GO:0004525|GO:0006396
Vra5g1331 1647 ProSiteProfiles Ribonuclease III family domain profile. 1224 1367 IPR000999 GO:0004525|GO:0006396
Vra5g1331 1647 ProSiteProfiles Ribonuclease III family domain profile. 1011 1183 IPR000999 GO:0004525|GO:0006396
Vra5g1331 1647 Pfam Dicer dimerisation domain 551 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1331 Vra-Chr5 20216875 20238857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1331 408 481 Eukaryotic Initiation Factors Gene Family AT3G19760 37.333 1.61e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1331 K11592 - gmx:100806831 2673.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1331 5 20216875 20238857 Vra5g1331 5 20216875 20238857 ECH