Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1330 ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCACTTCCTTCGTTCAGAGGTTTGCAACCATTGGAGCCAATGTCTCCTGTTTCGTCCTCTGTGCAAGTGCCATCATCAACTTCTCCTTTTGCCGGTCTCGTCATATGCGTCACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCTGTATAGCCCTAATTTGCATCCTCAATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGTAAGTTTGGGCATGCACTGAAGCATGGAGCAAAAAATGGGCTTTTTATTGTCACACTGGGTTGGTTTGTGGATAGCGTCAGGAAAAATGTGAGGTTGAGCGAATCACATTATAGAGTGAAGAGTTATGGGGATAACAATGTGCTCATGGAAGACTTTAGGCCGCTTTCTGAGTATACAAATGCTGATAATCATTGTCTTCCGGCGAGAATCCACCAAGTGAAGAAAGCTAATAATGTTGAGGAACTTCAAAGATTCTCTGTGAGAGAGTCTATCAGAAATTCGGACTCAGCTTTGTCTGGTTGCTCCATCTATGTTGATCCAGGCATTTCATCCGAGTTGAGGAACAAGGTTATTGAGTCTGCTTCAAGAGAAGGTGCTAATTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATACCTTGGATACTGTAATAACCTCATTACACCTCTGTGGATAATCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTTCACATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATGCTTGAAGACGTTAATAGTGGCATTTCAGGAAAGGAAGTAATAAAGCAAAAAGCCACTGACTATCCTCTAGACAGTGAAAGTGAAGTCGGCTATGAAGAAAGACAACAAATTGTGAACTCTGCAAAAATTGGAGTCAGAAATCGCCGTGGCCGTCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTTCTAGACTCTATCTGCTGGTCTATATCTGACTCAACTTCAACTGCTTCCATCTACACAGACTCTTTTAGTGTTGAAGATCCTAGTGAAAATCACGCTTCAATATTTTTCGACGCAAAAGGGGATGGCAAGGATTCAGAAGCTTCATTTTCGAACTCTACTCGTCCTCTGACAGAAAGTGAGAAATCCGAGTTGATATTCAAAAACCATTTCCTTACTATACTCTTCCCAATTGACCGTTTTTCCGAGATGGGTCCTTCATCGAGAACGTTTTTCAGCCATAATGGCTTTACGTGTCTTCAGGTGTTGGATCATATACATGCTTTTTATCAGGAGAACATGTCAAGGCAGGAAATTGAAGTTGCAATTCATAGTGATTCAAGACATGCTGATAGGCTTCGATCAGTGTACTCAAGTAAGGAAACAATAGCACGTGGCCACGTAATGTTCAAAAGGGTTGAATTCTTGGGTAGTCGAACAAGTTTTGAAATGTTGAAGCGTGTAAGTGGGGAAAACAACTCCAACGTTTATGAGCTATTACTTAGGGCCTAA 1620 0.4235 MGGDGRVEVVSGKGCSRLFSSSLPSFRGLQPLEPMSPVSSSVQVPSSTSPFAGLVICVTGLSKEARNQVMEATERLGGLYSPNLHPQCTHLVVQSFGGRKFGHALKHGAKNGLFIVTLGWFVDSVRKNVRLSESHYRVKSYGDNNVLMEDFRPLSEYTNADNHCLPARIHQVKKANNVEELQRFSVRESIRNSDSALSGCSIYVDPGISSELRNKVIESASREGANLVEQWFVGCNVSHVVTEGTSIQRYLGYCNNLITPLWIIKTAKEKYVRRLVHMSVDLAKQVGLMLEDVNSGISGKEVIKQKATDYPLDSESEVGYEERQQIVNSAKIGVRNRRGRRMQTCQTPIRPITPNNLLDSICWSISDSTSTASIYTDSFSVEDPSENHASIFFDAKGDGKDSEASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFSEMGPSSRTFFSHNGFTCLQVLDHIHAFYQENMSRQEIEVAIHSDSRHADRLRSVYSSKETIARGHVMFKRVEFLGSRTSFEMLKRVSGENNSNVYELLLRA* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1330 539 Pfam twin BRCT domain 54 120 IPR001357 -
Vra5g1330 539 ProSiteProfiles BRCT domain profile. 192 270 IPR001357 -
Vra5g1330 539 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 539 - -
Vra5g1330 539 CDD BRCT_TopBP1_rpt2_like 50 128 - -
Vra5g1330 539 Gene3D BRCT domain 49 140 IPR036420 -
Vra5g1330 539 SMART BRCT_7 48 128 IPR001357 -
Vra5g1330 539 SMART BRCT_7 194 270 IPR001357 -
Vra5g1330 539 Pfam Family of unknown function (DUF6699) 446 523 IPR046522 -
Vra5g1330 539 ProSiteProfiles BRCT domain profile. 46 138 IPR001357 -
Vra5g1330 539 SUPERFAMILY BRCT domain 46 139 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1330 43 138 Core DNA Replication Machinery Family AT1G77320 38.542 2.31e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1330 - - gmx:100815253 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1330 5 20209712 20215979 Vra5g1330 5 20209712 20215979 ECH