Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1329 ATGGCGGATGTCATGATAATGAAGGAGATCGAGGACACAGCACTGCGTTTGGGCGTGGATCTCTCCACTCTTGATCTCGACTCCATTCGTCTTCCTCCCGGTGAAACTTGCGGAATTGTCAGTGATGACGAGGAAGTTTACCAGGAAGATAATCTCGAGTTCGAGTCCGGATTTGGCAACATCGTTGTCGTCGACAACCTTCCTGTTGTTCCGAGGGAGAAGTTTGAAAAGCTCGAAGGAGTGGTTCGTAAAATTTATAGTCAGATTGGTGTCCTCAAAGAGGATGGCCTCTGGATGCCAGTTGATCCTGAAACTGATAAAACCCTAGGGTATTGCTTCGTTGAGTACAATACTCCCCAGGAAGCAGAGCTTGCTAAAGAGAAGACGAACGGATACAAATTGGATCGTGCACATATTTTTTGCGTGAGCATGTTTGATGATTTCGATAAGTTTATGAAGGTGCCCAACGAATGGGCTCCGCCGGAAACTAAGCCGTATGCTCCAGGGGAAAATCTTCAACACTGGCTCACTGATTCAAAGGCCAGGGACCAGTTTGTGATTCGCGCCGGTTCAGATACTGAGGTTTTGTGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTATAAGCGTGCTTTTTGGACCGAAAGTTTTGTCCAATGGTCTCCTCTGGGTACATACTTGGCCACTGTTCACAGACAGGGGGCAGCTGTATGGGGGGGTTCTTCAAGCTTTAACAGGCTTATGCGATATGCACATCCTCAGGTAAAACTTATTGATTTTTCACCTGGGGAAAAGTATCTGGTAACTTATAGTAGCCATGAACCAAGCAATCCTCGAGATGCCAATAGGGTTGTGATTAATATATTTGATGTGAGAACTGGCAAAGTGATGAGGGACTTTAAAGGCAGTGCCGATGATTTTGCTGTTGGAGGGGCTGGGGGTGTCACAGGAGTTTCATGGCCTGTTTTCAAATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGAAAAAATGTGCTCTCTGTGTATGAGACAGAGACATTTTCTCTTGTTGACAAGAAGTCCCTGAAGGTTGAGAATATAATGGATTTCTGCTGGTCTCCAACTGATCCAATTATTGCTCTCTTTGTTCCTGAGATGGGGGGTGGTAACCAGCCTGCGAGGGTAAGTCTGATCCAAATCCCCAGCAAGGAAGAACTCAGGCAGAAAAACCTTTTCAGTGTCAGTGACTGCAAGATCTATTGGCAAAGCAATGGAGACTACCTTGCTGTTAATGTTGAACGCTATACAAAAACAAAAAAAAGCACATACACAGGCTTTGAGCTTTTTCGTATAAAAGAGAGAGACATACCGATTGAAGTATTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCCTGGGAGCCAAAAGGCCATAGGTTTGCGGTTATTCATGGTGATAACCCTAAACCTGATGTAAGCATTTACTCCATGCGTACTGGTCAGAATAGCCGAGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAAGCAAATGCTCTGTTTTGGTCACCTGCAGGTCGCTACATTGTACTGGCTGGGCTGAAAGGATTCAATGGGCAGTTAGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCCGTGACATCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTCAATGGCAAGCATCTATATCGGATTCTGAAGGATCACTTCTTTCAGTTCTTGTGGAGACCAAGGCCACCATCTTTCTTGAGCCCTGAGAAAGAGGAAGAGATTGCCAAGAACTTGAAGAAGTACAGCAAGAAATATGAGGCAGAAGATCAAGATGTTTCACTGCTGCTGAGTGAACAAGAACGTGAGAAGAGAAGAATGTTGAAGGAAGATTGGGACAAGTGGGTCAATGAATGGAAGCGAATCCACGAAGAAGAGAGCTTACATCGACAGAAGCTCAGGGATGGGGAAGCCAGTGATGAAGAGGAAGAATATGAGGCAAAGGACATTGAAGTTGAGGAAGTCATTGACGTAAAAGAAGAGGTCCTTCATATTGAGTACGGTCAAGAGTGA 2157 0.4427 MADVMIMKEIEDTALRLGVDLSTLDLDSIRLPPGETCGIVSDDEEVYQEDNLEFESGFGNIVVVDNLPVVPREKFEKLEGVVRKIYSQIGVLKEDGLWMPVDPETDKTLGYCFVEYNTPQEAELAKEKTNGYKLDRAHIFCVSMFDDFDKFMKVPNEWAPPETKPYAPGENLQHWLTDSKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGSSSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSVYETETFSLVDKKSLKVENIMDFCWSPTDPIIALFVPEMGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKIYWQSNGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDVSIYSMRTGQNSRVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEDWDKWVNEWKRIHEEESLHRQKLRDGEASDEEEEYEAKDIEVEEVIDVKEEVLHIEYGQE* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1329 718 Gene3D - 183 382 IPR015943 GO:0005515
Vra5g1329 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Vra5g1329 718 Gene3D - 414 616 IPR015943 GO:0005515
Vra5g1329 718 PANTHER BNACNNG51870D PROTEIN 5 711 - -
Vra5g1329 718 SUPERFAMILY DPP6 N-terminal domain-like 218 598 - -
Vra5g1329 718 SMART rrm1_1 61 142 IPR000504 GO:0003723
Vra5g1329 718 SUPERFAMILY RNA-binding domain, RBD 50 141 IPR035979 GO:0003676
Vra5g1329 718 PIRSF Transl_init_eIF3b 8 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vra5g1329 718 CDD RRM_eIF3B 59 142 IPR034363 -
Vra5g1329 718 Pfam Eukaryotic translation initiation factor eIF2A 406 605 IPR013979 -
Vra5g1329 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vra5g1329 718 MobiDBLite consensus disorder prediction 675 694 - -
Vra5g1329 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 136 IPR000504 GO:0003723
Vra5g1329 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vra5g1329 718 Gene3D - 59 143 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1329 5 712 Eukaryotic Initiation Factors Gene Family AT5G27640 75.915 0.0 1167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1329 K03253 - gmx:100817394 1407.12