Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1326 ATGAACATGGAGAAGCATGCGATGTCTGGTGGTGGAGATTGTAAGAGTGGCGAAAAGTTATACAAAGGTGCGAGGAAGAGAAAGTGGGGGAAATGGGTTTCTGAAATCAGACTCCCCAATAGCCGAAAACGCATATGGTTAGGGTCTTATGATTCTCCTGAAAAAGCAGCACGAGCCTTCGATGCTGCCCTTTTCTGTCTACGTGGTCGCCGTGCCAATTTCAACTTCCCCAACACTCCTTGCAACATGGACACCAATGTGCCTCTGCCTGTGCCTGCTCTCCAATCTCTTACTCCACACGAGATTCAAGAGGTTGCTGCTAAGTTTGCAAACGAGGACCCATTACTACTAAAACCTCTTGCACAAGAATCTCATGCTGATGCTGCTGCTGCTGCTGCTGCTGGGAATTCTTCATCATTTCGAGGGAATTTGTGTAAATCTGACGGCACAGTAGAGAGTAGTTCTATTACCTGCACGCCCACCACCACTACCTTATGTTCTACTATGCATGAATGTGATGGATTGGTGCAGGTGGATCATGGGGACATGGATTGGACATTTTTGAAAGAGTTTGATTACTCCAACGAAGTTTTCCCTGTTGGATCCGACTATGATCTCTACTCTGAGCTACACAAGATGCACTCAACTTCAGGTGAGTTATTGTATTCCACTCCACCCCCACCTCCTTTTGAGGGTTACCAAGAATTGACCGAAGCTGAAGAAGATCCTTTTTCTCACCAGTCATTCCTTTGGAATTGGAACTTTTGA 768 0.4609 MNMEKHAMSGGGDCKSGEKLYKGARKRKWGKWVSEIRLPNSRKRIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPVPALQSLTPHEIQEVAAKFANEDPLLLKPLAQESHADAAAAAAAGNSSSFRGNLCKSDGTVESSSITCTPTTTTLCSTMHECDGLVQVDHGDMDWTFLKEFDYSNEVFPVGSDYDLYSELHKMHSTSGELLYSTPPPPPFEGYQELTEAEEDPFSHQSFLWNWNF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1326 255 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Vra5g1326 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 18 255 - -
Vra5g1326 255 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Vra5g1326 255 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Vra5g1326 255 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677
Vra5g1326 255 Pfam AP2 domain 21 69 IPR001471 GO:0003700|GO:0006355
Vra5g1326 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 255 - -
Vra5g1326 255 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vra5g1326 255 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Vra5g1326 255 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1326 Vra-Chr5 20170831 20171619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1326 21 111 AP2-EREBP Transcription Factor Family AT1G74930 71.429 6.39e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra5g1326 AP2 1.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1326 - - vra:106760431 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1326 5 20170831 20171619 Vra5g1326 5 20170831 20171619 ECH