Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1321 ATGGTCTGCGAGATGGAGAATGATTGCACAGAGGACATGGACATTGAGGCCCTTCCTTCAATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAGCAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACTATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGTCTCATGGAGCTTACAAATTTTACAGAAAAGGGGTCTTCTCAGTTGGCATACCTAATGAAACACTGGGAGTACAAACAGGCCAATGTTGTGCGTCTTCTCAGAGAAGAACTCGACAACCTTAGCAAGCAGAGGCAGGATGTTGAACTCAGGAAATTGGAGATATTAGAAGAACATCGATTTGTGGAAGAAAGATATGGGGGTGATAAACGCCCAGTTTCTATTTTGGATGACGTTTATGATGGTATATGGCATGATGTACCTTGCAGGAAAAGTGATGCTGTGGTTCAAAACAAGAAGAACGAGATTGATGCTGAGTATGGCACTGTCATGTACTGGAAACAGCGAGCCTTGCAATTAGAGAAGCAGCTGGAGGCAAGTATCCAAAGGGAACAGATACTTGAAGAGAAGTTGCAAGAAAGTATAGCAAACATTGAGAGGCAGTCCTCACCGGTGGAAGAACTGTCCCAGATCCTAAAAAGGGCAGACAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCACCAGGACAAAGATTTGCGCTATTGTTTTATATACAATCATTTCCCAAGTTTACAAGAAGAGGACATCATAGGAAAAACGGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAATCTCAAGAGTTTAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTGTTTGGATCAAAAACATTTTTGATATATGTAGAACCCGTGTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGGGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTCCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAAACAATGCGAGCAAAACAAATGCTGGCAACAATGTCTCACGAGATAAGATCTCCTTTATCTGGGGTTGTTAGCATGGCTGAAGTTCTTTCTAACACAAAACTTGATTGGGAGCAAAGACAACTCTTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATCCTCGATCTTTCCAAGGTTGAATCAGGAGTCATGAAATTGGAAGCTACTAAATTCCGGCCAAGAGAGGTAGTCAAACATGTACTCCAGACTGCTGCAGTTTCATTGCAAAAAGTACTAACCTTGGAAGGACATGTAACTGATGATGTACCTATTGAGGTCGTTGGTGATGTTTTAAGGATGCGGCAAATTCTCACGAATTTAATTAGCAATGCCGTGAAGTTCACCCATGATGGCAAAATTGGAATAAACCTTTACGTCGTGCCAGAACCTTCTTTTGCAAAGGCAGAATGCATACAAAAGATGACTTCAGAGCATTCACCTATTTCAGCCCCTCAAAGTGGCAGCGATAGAAAGCCTCTTGGTGATGATTGTCCCAGCCAAAACCATGCATTCAATGACGAATGTAGATCACCGGTTAAAAGCGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTTATTCAGCTGGAACAACAGTGTGGATACGTTGTGATGTATATGACACGGGCATTGGAATACCAGATGCTATACCAACCTTGTTTAAAAGGTACATGCAAGTCAGTGCAGACCATTCTCGAAAGTACGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAGCTGGTTGAGTTGATGGGGGGTCGTCTAACCGTGTCTAGCAAAGAACATTATGGTTCTACCTTCACTTTCATACTTCCATACAAGGTTTCAATTGCTTGTGATAATTCTGATGACCAGGATGAGCTGTCTGATGTAGAGAATAATGATGCTGCATCTGATGATACAATAGAAAGTTTCTTCCAATTCCAGCCACGCACTTTGGGCTCTCTATTCTCATCTAATGGATGTAGCAGGACACAGATGTTATTACCAAACAAAATTGGCTACAGAAGCTCCTATAAACTTGGTGGATTTTCTGACAGTTTATATTCAATCCTCTCTAATGATATCATGTCAAAAGAGACATGCTCAGTTGATGATTCATCTTCAGTTGTTGATGGTCCAGAGATGTCTGAATCAGCCAGTTCATCTGGTCACAGCTCAGAAACAAAGAACAGAAGTTTAGTTAGCAGAGATAAACTCCAGCAAGATAAGGCTCATACCTGGTCCTTGAATGGTTATGCAGATTCCTCTGAAGCAACTGTGGCAAGTGGAGAAATGGCTGCAGCAACAAAGTCATGTGAATCCCAACAAACATGTCAGGGTCACGGGAGGACAAACACAACTATTCAATCAAGCAACGGTACACCAGGAGTAACCAAATCCTCATCATGGCCTAAGATCCTTCTTGTTGAAGATACTAAGATTAATATCATGGTGACACAGACCATGATGAAGCAATTAGGCCATAGCATAGATGTTGTGAATAATGGAGTGGAAGCTGTACGTGCAGTTCAGCGCTGCAGTTATGACCTGATTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTGAAGCAACAAAACTGATTCGATCTTTTGAGGAAACAGGCAATTGGGATGCTGCAAGAAATGCAGGAATCGAGCAAAGTCTTCCAGATTCAGATTATGAATGTTTTGAACCTACTAGAAAGCGGATTCCCATTGTTGCTATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTATGCAAATGGAATGGATTCGTTTGTATCAAAACCTGTAACTCTCCAGAAACTGAAAGAGTGTATTGAACAGTACCTGAGGTGA 3000 0.415 MVCEMENDCTEDMDIEALPSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTNFTEKGSSQLAYLMKHWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFVEERYGGDKRPVSILDDVYDGIWHDVPCRKSDAVVQNKKNEIDAEYGTVMYWKQRALQLEKQLEASIQREQILEEKLQESIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKDLRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEVLSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAVSLQKVLTLEGHVTDDVPIEVVGDVLRMRQILTNLISNAVKFTHDGKIGINLYVVPEPSFAKAECIQKMTSEHSPISAPQSGSDRKPLGDDCPSQNHAFNDECRSPVKSECSMNGDTEEQPYSAGTTVWIRCDVYDTGIGIPDAIPTLFKRYMQVSADHSRKYGGTGLGLAICKQLVELMGGRLTVSSKEHYGSTFTFILPYKVSIACDNSDDQDELSDVENNDAASDDTIESFFQFQPRTLGSLFSSNGCSRTQMLLPNKIGYRSSYKLGGFSDSLYSILSNDIMSKETCSVDDSSSVVDGPEMSESASSSGHSSETKNRSLVSRDKLQQDKAHTWSLNGYADSSEATVASGEMAAATKSCESQQTCQGHGRTNTTIQSSNGTPGVTKSSSWPKILLVEDTKINIMVTQTMMKQLGHSIDVVNNGVEAVRAVQRCSYDLILMDVCMPVMNGLEATKLIRSFEETGNWDAARNAGIEQSLPDSDYECFEPTRKRIPIVAMTANALSESAEECYANGMDSFVSKPVTLQKLKECIEQYLR* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1321 999 PRINTS Bacterial sensor protein C-terminal signature 590 604 IPR004358 GO:0016310|GO:0016772
Vra5g1321 999 PRINTS Bacterial sensor protein C-terminal signature 624 642 IPR004358 GO:0016310|GO:0016772
Vra5g1321 999 PRINTS Bacterial sensor protein C-terminal signature 648 661 IPR004358 GO:0016310|GO:0016772
Vra5g1321 999 MobiDBLite consensus disorder prediction 753 787 - -
Vra5g1321 999 Coils Coil 92 119 - -
Vra5g1321 999 ProSiteProfiles Histidine kinase domain profile. 379 664 IPR005467 -
Vra5g1321 999 Gene3D - 848 999 - -
Vra5g1321 999 SMART REC_2 854 994 IPR001789 GO:0000160
Vra5g1321 999 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Vra5g1321 999 MobiDBLite consensus disorder prediction 531 578 - -
Vra5g1321 999 CDD HATPase_EvgS-ArcB-TorS-like 488 661 - -
Vra5g1321 999 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 426 662 IPR036890 -
Vra5g1321 999 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 998 - -
Vra5g1321 999 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Vra5g1321 999 SUPERFAMILY PYP-like sensor domain (PAS domain) 217 334 IPR035965 -
Vra5g1321 999 Gene3D - 360 437 - -
Vra5g1321 999 Gene3D - 438 667 IPR036890 -
Vra5g1321 999 CDD REC_hyHK_CKI1_RcsC-like 856 994 - -
Vra5g1321 999 MobiDBLite consensus disorder prediction 826 851 - -
Vra5g1321 999 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Vra5g1321 999 Gene3D PAS domain 213 349 - -
Vra5g1321 999 SUPERFAMILY CheY-like 854 999 IPR011006 -
Vra5g1321 999 ProSiteProfiles Response regulatory domain profile. 855 998 IPR001789 GO:0000160
Vra5g1321 999 Coils Coil 178 209 - -
Vra5g1321 999 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 662 IPR003594 -
Vra5g1321 999 Pfam Response regulator receiver domain 856 923 IPR001789 GO:0000160
Vra5g1321 999 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 998 - -
Vra5g1321 999 MobiDBLite consensus disorder prediction 753 779 - -
Vra5g1321 999 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
Vra5g1321 999 SMART HKATPase_4 483 664 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1321 Vra-Chr5 20096528 20101731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1321 1 998 Histidine Kinase Gene Family AT5G10720 58.234 0.0 1109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra5g1321 HATPase_c 1.4e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1321 - - gmx:100819520 1689.86