Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1317 ATGGCTTCCAAGCTCTGTGACTCATGCAAGTCCGCCACCGCCACCTTGTACTGCCGCCCCGATGCCGCCTTCCTATGCGGCGCCTGCGATTCCAAGGTCCACGCTGCCAACAAGCTCGCCTCGCGCCACCCACGCGTTGCGCTCTGCGAGGTATGCGAGCAGGCGCCCGCGCACGTCACCTGCAAGGCTGACGCCGCCGTGCTCTGCCTCGCCTGCGACCGTGACATCCACTCCGCCAACCCCCTCGCCAGCCGCCACGAGCGTCTCCCTGTCACGCCCTTCTACGAGTCTGTACACTCCGTCAAGGCCTCCTCGCCTATCAACTTTCTCGACGACCACCGCTTCTTCTCCGACGCCGACGCTGATGTCAGCACCGAGGAGGCCGAGGCCGCGTCCTGGTTGTTACCTACTCCTAAAACAGATCTAAATTCCTCTCAGTACTTGTTCTCCGAATCCGAACCCGTTCCTTACATAGATCTGGACTATGCCGTCGCGGATCCGAAAGCGGATCCGAAAGGCTCCGCTACCGCCGACGGCGTGGTTCCGGTGCAGAGCAACTACGAGCCGTTCGCCTACGGTTACAAATACAATTCCACCACTCTCTCGCAGTCACAGTCTCAGATGAGCCAAAGTGTATCGTCGTCGTCGATGGAGGTTGGAGTTGTGCCGGACGGAAACACGATGTCGGAGATATCGAACTGCAGCTACAGCAAGGTGGCCGCGGTGACAGTGACGGCTCAGTTTTCGGCGGCGGATAGGGAGGCAAGAGTGTTGAGGTACCGGGAGAAAAGGAAGAACCGAAAGTTCGAGAAGACAATTCGTTATGCTTCAAGAAAAGCGTATGCAGAAACGAGACCAAGGATCAAAGGCAGGTTCGCTAAACGTTCTGATGCGGACCCTCTGGCTGGATACGGCGTCGTTCCGTCGTGCTGA 933 0.5874 MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVALCEVCEQAPAHVTCKADAAVLCLACDRDIHSANPLASRHERLPVTPFYESVHSVKASSPINFLDDHRFFSDADADVSTEEAEAASWLLPTPKTDLNSSQYLFSESEPVPYIDLDYAVADPKADPKGSATADGVVPVQSNYEPFAYGYKYNSTTLSQSQSQMSQSVSSSSMEVGVVPDGNTMSEISNCSYSKVAAVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDADPLAGYGVVPSC* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1317 310 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Vra5g1317 310 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Vra5g1317 310 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Vra5g1317 310 SMART bboxneu5 1 48 IPR000315 GO:0008270
Vra5g1317 310 SMART bboxneu5 49 91 IPR000315 GO:0008270
Vra5g1317 310 CDD Bbox1_BBX-like 5 48 - -
Vra5g1317 310 Pfam CCT motif 253 295 IPR010402 GO:0005515
Vra5g1317 310 ProSiteProfiles CCT domain profile. 253 295 IPR010402 GO:0005515
Vra5g1317 310 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 309 IPR045281 GO:0009909
Vra5g1317 310 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 309 - -
Vra5g1317 310 CDD Bbox1_BBX-like 48 91 - -
Vra5g1317 310 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1317 Vra-Chr5 20065125 20066630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1317 1 309 C2C2-CO-like Transcription Factor Family AT5G24930 54.907 2.26e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vra5g1317 zf-B_box 9.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1317 - - gmx:100794431 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1317 5 20065125 20066630 Vra5g1317 5 20065125 20066630 ECH