Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1316 ATGATCACTTGGAAGCATTGGCAAGAAAGAAGACACATATTGGTTCAAAATTCCCAGGATGCAATTGTGAGCGGTGGGGGTCTAAGTCATAATGGAAAATTCAGCTATGGGTATGCTAGCTCTCCCGGCAAGAGATCTTCAATGGAAGATTTTTACGACACTAGAATTGATGGTGTTAATGGTGAAGTCGTTGGCCTTTTCGGAGTTTTTGATGGTCATGGTGGTGCTCGTGCTGCTGAGTACGTCAAGAAAAACTTGTTTAGTAATTTGATCAGTCACCCGAAATTCATTTCTGACACCAAATCAGCCATATCTGATGCATATAATCATACCGATTCTGAGTTTCTGAAGTCAGAAAAGAACCAAAATAAAGATGCTGGTTCAACTGCTTCCACTGCGATTTTAGTTGGTGATCGCTTGCTTGTTGCAAATGTTGGGGATTCCAGAGCTGTCATATGCAGGGGTGGTAATGCTATTGCTGTTTCTCGAGACCACAAACCAGACCAAACTGATGAGAGGCAGAGGATTGAAGAGGCAGGAGGATTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGAGCGTTTGGTGATAGACTCTTAAAGCAATATGTTGTTGCTGATCCAGAAATTCAGGAAGAAAAAGTTGACAAGTCCCTTGAGTTTCTTATCCTAGCTAGTGATGGACTATGGGATGTTGTCTCAAATGAGGAAGCAGTTACTATGATTAAACCAATTGAGGATGCTGAAGAAGCAGCAAAGAGGTTGATGCAAGAAGCATATGGGAGAGGTAGTGCAGACAATATCACATGTGTTGTGGTTCGTTTCTTGACTAACCATGGCACTTCTTCTCATGGTTGTTCTGGAGGTAATCATGGCACTTCTTCTCATGCTAATTCTGGAGGTAATCAAGGAACTTCTCATGGTAGTTCTGGAGGTAAACATGGCACTTCTCTTGGTAGTTCTGGAGATAATCATGGCACTTCTCATGGTAGTTCTGAAGGTAACTATGGCACTTCCCATGGTAGTGCTGGAGGTAACCATGGCACTTCTCATGGTAGTTCTGAAGGTAACCATGGCATTTCTCATGGTAGTTCCGTAGGTAACCAAGGCACTTCCCATGGTAATTCTGGAGGTAACCAAGGCATTTCTCATGGTAGTTCTAGAAGTAACCTGGGCATTTCTCATGGTAGTTCTGGAGGTAACCAGGATATTCCTCGTGGTGATTCTGGAGGTAACCGTGGCACTTCTTCTCATCGTAGTTCTGGAGGTAACCAAGGCATTTCTCATGGTGATTCTAGAGGTAACCATGGCATTTCTCATGATAGTTCCGTAGGTAACCAGGGCACTTCCCATGGTAATTCTGGAGGTAATCAAGGCATTTCTCATGGTAGTTCTGGAAGTAACCAAGGCATTTCTCATGGTAGTTCTGGAGGTAACCAGGATATTCCTCATGGTGATTCTGGAGGTAACCGTGGCACTTCTTCTCATCGTAGTTCTGGAGGTAACCAAGGCATTTCTCATGGTGATTCTGGAGGTAACCATGGCACTTCTTCTCATGGTAGTTCTGGAGGTAACCAAGGCATTTCTCATGGTGGTTCTGGAGGTAACCACGGTACTTCTTCTCATGGTAGTTCTGGAGGTAACTATGGCACTTCACATGGTAGTTCTGGTGGTAACCATGGCATATCTCATGGTGGTTCTGGAGGTAACCGTGACACTTCTTCTATTGGTAATTCTGGAGGTAACCGTGACACTTCTTCTATTGGTAATTCTGGAGGTAACCACGGCACTTCCCAAGGTAGTTCTGGAGTTCTGGAGGTAACCATGGCACTTCTCATGGCAGTTCTGGAGGTAACCATGGCACTTCCCATGGTAGTTCTGGAGGTAACTATGGCATTTCTCATGGTGGCTCTGGAGGTAATCATGGTACTTCTTCTCGTGGAGGTAACCAAGGCCCTTCTTCTCATGGTAGTTCTGGAGGTGTTAATAAAAACCCTCCGAAAGTTTATTATAACTGAGTAA 2040 0.4436 MITWKHWQERRHILVQNSQDAIVSGGGLSHNGKFSYGYASSPGKRSSMEDFYDTRIDGVNGEVVGLFGVFDGHGGARAAEYVKKNLFSNLISHPKFISDTKSAISDAYNHTDSEFLKSEKNQNKDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEEAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDKSLEFLILASDGLWDVVSNEEAVTMIKPIEDAEEAAKRLMQEAYGRGSADNITCVVVRFLTNHGTSSHGCSGGNHGTSSHANSGGNQGTSHGSSGGKHGTSLGSSGDNHGTSHGSSEGNYGTSHGSAGGNHGTSHGSSEGNHGISHGSSVGNQGTSHGNSGGNQGISHGSSRSNLGISHGSSGGNQDIPRGDSGGNRGTSSHRSSGGNQGISHGDSRGNHGISHDSSVGNQGTSHGNSGGNQGISHGSSGSNQGISHGSSGGNQDIPHGDSGGNRGTSSHRSSGGNQGISHGDSGGNHGTSSHGSSGGNQGISHGGSGGNHGTSSHGSSGGNYGTSHGSSGGNHGISHGGSGGNRDTSSIGNSGGNRDTSSIGNSGGNHGTSQGSSGVLEVTMALLMAVLEVTMALPMVVLEVTMAFLMVALEVIMVLLLVEVTKALLLMVVLEVLIKTLRKFIITE* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1316 679 ProSiteProfiles PPM-type phosphatase domain profile. 35 281 IPR001932 -
Vra5g1316 679 SMART PP2C_SIG_2 51 281 IPR001932 -
Vra5g1316 679 CDD PP2Cc 34 281 IPR001932 -
Vra5g1316 679 Pfam Protein phosphatase 2C 64 274 IPR001932 -
Vra5g1316 679 Gene3D - 27 286 IPR036457 -
Vra5g1316 679 MobiDBLite consensus disorder prediction 287 606 - -
Vra5g1316 679 SMART PP2C_4 25 279 IPR001932 -
Vra5g1316 679 SUPERFAMILY PP2C-like 29 281 IPR036457 -
Vra5g1316 679 PANTHER ALPHABET, ISOFORM E-RELATED 15 304 - -
Vra5g1316 679 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 15 304 - -
Vra5g1316 679 ProSitePatterns PPM-type phosphatase domain signature. 66 74 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1316 Vra-Chr5 20051593 20057583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1316 18 286 PP2C-type Phosphatase Gene Family AT4G31750 88.848 1.29e-177 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1316 K17506 - vra:106761292 1061.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1316 5 20051593 20057583 Vra5g1316 5 20051593 20057583 ECH