Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1313 ATGGAGAAAAGAACAAGAACTCTTTCCGTGGCCATCTCTTCTCTTTTTATGTTTTCTTTCGTTTGCTTTGTTAAGGGTAGCCTCTCTTTCAACTTCTACGCAGCTTCATGCCCATCAGCTGAGTTAATCATAAGAGACACAGTTAGCTCATTCTCTTCTACTGATCCTTCTATTCCTGGAAAGCTCCTTCGCTTGGTTTTCCATGATTGCTTTGTGGAGGGATGTGATGCCTCTTTGATGCTGCAAGGGAACAATACAGAACAAAGTGATCCAGGAAATAGATCTGTTGGAGGATTTTCGGTGATAGATTCAGCAAAAAGGGTCCTTGAGAAATTCTGCCCTGGAACAGTTTCTTGTGCGGACATAATAGCTATGGCTGCTAGAGATGCTGTCGAAATAGCTGGTGGACCTAGAATTATGATTCCTACAGGTAGGAGAGATGGGATGGTTTCACTTGCTTCAAATGTCAGACCCAACATTGTGGATACCAGTTTTTCAATGGATGAGATGGTTCAACTCTTTGCCAGTAAAGGATTATCCTTACTTGATCTTGTAGTCCTTTCAGGAGCTCATACCATAGGCACAGCACATTGCAGCTCATTCAGGGATCGTTTTGAAGAAGATTCAAGGGGAAAGCTTATGCTGGCTGACAAAACCCTTGACAGTGACTATGCTAAAGTGCTGATGGAAGAATGTCCATCTGGTGTACAACCATCTGTAAAGGTGAACAATGATCCTCAAACATCTTTGGTCTTTGACAACATGTACTACCAAAACCTTCTGGCTCACAAGGGCCTCTTCCAATCAGATTCTGTTCTCATAAGCAATGATAGCACAAGGATATTAGTGGAGGATTTTGCAAATGATCAAGACCTTTTCTTTCAAAATTGGGCTCAGTCCTTCTTGAAGCTCACTAGTGTTGGAGTCAAATCTGGTGATGTGGGTGAAATTAGAATATCTTGTGCATCAACTAATGCATAA 981 0.4179 MEKRTRTLSVAISSLFMFSFVCFVKGSLSFNFYAASCPSAELIIRDTVSSFSSTDPSIPGKLLRLVFHDCFVEGCDASLMLQGNNTEQSDPGNRSVGGFSVIDSAKRVLEKFCPGTVSCADIIAMAARDAVEIAGGPRIMIPTGRRDGMVSLASNVRPNIVDTSFSMDEMVQLFASKGLSLLDLVVLSGAHTIGTAHCSSFRDRFEEDSRGKLMLADKTLDSDYAKVLMEECPSGVQPSVKVNNDPQTSLVFDNMYYQNLLAHKGLFQSDSVLISNDSTRILVEDFANDQDLFFQNWAQSFLKLTSVGVKSGDVGEIRISCASTNA* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1313 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Vra5g1313 326 Pfam Peroxidase 45 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 Gene3D - 31 325 - -
Vra5g1313 326 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 PANTHER PEROXIDASE 18-RELATED 17 324 - -
Vra5g1313 326 Gene3D Peroxidase, domain 2 161 304 - -
Vra5g1313 326 PANTHER PEROXIDASE 25-RELATED 17 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 CDD secretory_peroxidase 28 321 IPR033905 GO:0004601|GO:0042744
Vra5g1313 326 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 SUPERFAMILY Heme-dependent peroxidases 28 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra5g1313 326 ProSiteProfiles Plant heme peroxidase family profile. 27 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1313 Vra-Chr5 20024398 20027213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1313 15 325 Peroxidase AT4G31760 60.577 9.28e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1313 K00430 K18328 gmx:102664900 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1313 5 20024398 20027213 Vra5g1313 5 20024398 20027213 ECH