Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1307 ATGGGAATATATCTCAGCACTCCCAAAGTTGAAAAGTTTTCCGAAGATGGTGAAAATGAGCATCTTAGATATGGTTTATCATCCATGCAAGGGTGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTAATCTGGATGATTCAACTTCATTTTTTGGTGTCTACGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCGAAGTTTCTCCACCAAGAGGTGCTCAAAAGTAAAGCATACTTAACTGGAGATATAGGAACCTCCCTTCAGAAATCCTTTTTAAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGGGAATTATCAATATTGGGGGATAAGATAAACAAGTTTACTGGGATGATAGAAGGTTTGATTTGGTCTCCAAGAAGCAGTGATGGTAATTGCCAAGTTGATGATTGGGCTTTTGAGGAGGGCCCTCATTCTGATTTTGCTGGACCAACTTCGGGAAGCACTGCCTGTGTTGCAGTTATTAGAAACAACCAACTTGTTGTTGCAAATGCTGGTGATTCGCGATGTGTGATATCTCGGAAGGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTAATCTTGAGATTGAGAAGGAAAGAATCTTAAAAGCTGGTGGTTTTATTCACGCTGGACGTGTTAATGGAAGTTTAAATCTTGCAAGAGCTATTGGTGACATGGAATTTAAACAGAATAAATTTCTTCCTGCTGAGAAACAAATTTTAACTGCCAATCCAGACATAAACACTGTTGAGCTTTGTGACGAAGATGAATTTGTGGTGTTAGCTTGTGATGGCATATGGGATTGCATGTCAAGTCAACAACTAGTAGATTTTATTCATACCAAATTGTACACGGAAACCAAACTTTCCGCCGTGTGTGAATTAGTACTTGACCGGTGTTTGGCACCATCAACTGCCGTTGGCGAGGGATGTGACAATATGACCATGATCTTGGTGCAATTCAAAAGACCTGCTCAGTGCAATGCATCAACAGAAGAGCAATCCTCTTCAACCGGACAAGCTGAACCTGAAACACAACTGGAGAGAAGTGAAAGAACGGAGCTGCATGAGGTGGTGCCTTTTATGGGATCCATTGAATACATAGAATATTGA 1137 0.4142 MGIYLSTPKVEKFSEDGENEHLRYGLSSMQGWRATMEDAHAAYTNLDDSTSFFGVYDGHGGKVVAKFCAKFLHQEVLKSKAYLTGDIGTSLQKSFLRMDEMMRGQRGWRELSILGDKINKFTGMIEGLIWSPRSSDGNCQVDDWAFEEGPHSDFAGPTSGSTACVAVIRNNQLVVANAGDSRCVISRKGQAYNLSRDHKPNLEIEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQILTANPDINTVELCDEDEFVVLACDGIWDCMSSQQLVDFIHTKLYTETKLSAVCELVLDRCLAPSTAVGEGCDNMTMILVQFKRPAQCNASTEEQSSSTGQAEPETQLERSERTELHEVVPFMGSIEYIEY* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1307 378 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vra5g1307 378 Gene3D - 1 330 IPR036457 -
Vra5g1307 378 SMART PP2C_SIG_2 28 329 IPR001932 -
Vra5g1307 378 PANTHER PROTEIN PHOSPHATASE 2C 1 342 IPR015655 GO:0004722|GO:0006470
Vra5g1307 378 SMART PP2C_4 13 327 IPR001932 -
Vra5g1307 378 MobiDBLite consensus disorder prediction 337 352 - -
Vra5g1307 378 CDD PP2Cc 23 329 IPR001932 -
Vra5g1307 378 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Vra5g1307 378 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Vra5g1307 378 Pfam Protein phosphatase 2C 155 313 IPR001932 -
Vra5g1307 378 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 342 - -
Vra5g1307 378 MobiDBLite consensus disorder prediction 337 361 - -
Vra5g1307 378 SUPERFAMILY PP2C-like 3 331 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1307 Vra-Chr5 19985140 19992692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1307 1 341 PP2C-type Phosphatase Gene Family AT2G25070 75.660 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1307 K17499 - gmx:100787778 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1307 5 19985140 19992692 Vra5g1307 5 19985140 19992692 ECH
Vra6g1679 6 32821422 32827302 Vra5g1307 5 19985140 19992692 PCT