Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1304 ATGCTCTGCTATGCTATGCTATCTTCTAACACTCAACGGCTAGTTTCTCTCTTCTTCTTCACTTTAAATACAACACTCCTCTCACTACTGCATACCCCCACTCGTGCTTCTGAGAGTAAGAAAGGTAAAATCTCTTCGGTTCTCAAAAAGGAAAAGACCATGGCTAGTTCCTCAAGAGCCGTCTCTGCTTCCCTTTTGTTCTTTTTCCTTCTTCTTGGATCCTCAGCAGCTAAGGAACTATTAGTTGGAGGCAAGATTGATGCTTGGAAGATTCCATCTTCAGAAGTAGATTCTCTCAATCAATGGGCTGAAAAGTCTCGTTTCAGAGTTGGCGACTATCTGGTGTGGAAATTTGAAAGTGGGAAGGACTCAGTGTTGGAAGTAACAAGAGAGGAATATGGTAATTGCAGCACCTCTAACCCAATCAAAGAGTACAGTGATGGGAATACTAAGGTGATGCTAGAACGTCCTGGGCCATTCTACTTCATTAGTGGAGCAAAGGGGCACTGTGAGAAGGGCCAAAAGTTGGTTGTGGTTGTCATTTCTCCAAAGCACACATTCCGTGCAATTTCTCCGGCACCTTCTCCGGCGGAGTTTGAGGCTCCAGCTGTTGCTCCTACTAGTACTGCTACAACCTTGCAAGTTGCTGTTCTAACCTCAACTCTCCCAGTGTTCGCCATGACTTTGATGGTCACGTTCTTTTAA 705 0.4482 MLCYAMLSSNTQRLVSLFFFTLNTTLLSLLHTPTRASESKKGKISSVLKKEKTMASSSRAVSASLLFFFLLLGSSAAKELLVGGKIDAWKIPSSEVDSLNQWAEKSRFRVGDYLVWKFESGKDSVLEVTREEYGNCSTSNPIKEYSDGNTKVMLERPGPFYFISGAKGHCEKGQKLVVVVISPKHTFRAISPAPSPAEFEAPAVAPTSTATTLQVAVLTSTLPVFAMTLMVTFF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1304 234 PANTHER BLUE COPPER PROTEIN 48 224 IPR039391 GO:0009055
Vra5g1304 234 CDD OsENODL1_like 78 181 IPR041846 -
Vra5g1304 234 Pfam Plastocyanin-like domain 89 174 IPR003245 GO:0009055
Vra5g1304 234 Gene3D - 76 185 IPR008972 -
Vra5g1304 234 ProSiteProfiles Phytocyanin domain profile. 78 182 IPR003245 GO:0009055
Vra5g1304 234 SUPERFAMILY Cupredoxins 77 181 IPR008972 -
Vra5g1304 234 PANTHER EARLY NODULIN-LIKE PROTEIN 3 48 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1304 Vra-Chr5 19971697 19972817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1304 64 216 Phytocyanin Superfamily AT2G25060 58.442 5.96e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1304 - - gmx:100305551 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1304 5 19971697 19972817 Vra5g1304 5 19971697 19972817 ECH
Vra6g1676 6 32796537 32797712 Vra5g1304 5 19971697 19972817 PCT