Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1296 ATGGTAAAAGATGGTTATGAGTGGAAGAAATATGGGCAGAAGAAGACAACGAAAGATAATCCTTCACCCAGAGCTTATTACAAGTGCGCATTGGCTCCTACATGCCCCGTCAAGAAAAAGGTGCAAAGAAGCATACAGGATAAGTCTATCGTTGTTGCAACTTACGAAGGAAAGCATAACCACGGTTTTCCTTTTCGTGATTTATTCAAGCCATCATCGGTTACACCCGAAGCCTCAATAATGGATAACGATTTACCTATGACAAACATATCAAACGACATCAACATCGACCTTTGTCTATGCAATCGTGTTCCGACAGATGTAACAGATAAACAGCAGAAGGACGGTGGCAGTAACATGAAAGCTCTGGAATGTATAAGTTCTCTGCTAAAAGATCCTAACTTCATTGCACCATTAGCTGAAGCAGTTGTTCTCTCCATCAATAGCCAGAGTGAGCAAGTGGGTCTTAACCTGAGTTTGGGTCTTCCTCAATCGGATTTGTCTAAGTGA 510 0.4176 MVKDGYEWKKYGQKKTTKDNPSPRAYYKCALAPTCPVKKKVQRSIQDKSIVVATYEGKHNHGFPFRDLFKPSSVTPEASIMDNDLPMTNISNDINIDLCLCNRVPTDVTDKQQKDGGSNMKALECISSLLKDPNFIAPLAEAVVLSINSQSEQVGLNLSLGLPQSDLSK* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1296 169 SMART WRKY_cls 2 63 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1296 169 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 2 151 - -
Vra5g1296 169 MobiDBLite consensus disorder prediction 1 21 - -
Vra5g1296 169 Pfam WRKY DNA -binding domain 3 61 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1296 169 Gene3D WRKY domain 1 65 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g1296 169 ProSiteProfiles WRKY domain profile. 1 64 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1296 169 Coils Coil 167 169 - -
Vra5g1296 169 MobiDBLite consensus disorder prediction 1 17 - -
Vra5g1296 169 SUPERFAMILY WRKY DNA-binding domain 2 64 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g1296 169 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 151 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1296 Vra-Chr5 19895897 19897473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1296 1 150 WRKY Transcription Factor Family AT1G80840 45.122 1.19e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra5g1296 WRKY 1.6e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1296 - - vra:106760427 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1669 6 32662104 32664336 Vra5g1296 5 19895897 19897473 PCT